FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001831524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001831524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1723055
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC34770.20179274602377756No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA31770.18438181021499606No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC31270.18147998758019912No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC28960.16807356700743736No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA22650.1314525653563003No Hit
GTATAAGGTGATCGCAGGTTGTGCAATCATTGCTCAAAAGGGTGTACACC21160.12280513390460548No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC20070.1164791605607482No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC18000.10446561485268897No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)