FastQCFastQC Report
Wed 8 May 2024
EGAF00001833494

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001833494
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1787017
Total Bases269.8 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACG21150.11835365863894971No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG20740.11605933239583058No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC18010.10078247716725694No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)