FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001833532

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001833532
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2005888
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC49560.2470726182119839No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA48530.24193773530725546No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC44060.21965334056537555No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC35820.1785742773275477No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA30210.15060661412800716No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC27920.13919022398060113No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC22770.11351580945695872No Hit
GTCTTAGCAGTAGTTTATAAGGAATATATCCCATTTTTAGTTATAATGAT21640.10788239423138281No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)