FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001833542

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001833542
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2136839
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC43070.20155940620701887No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA40510.189579093230702No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC38330.17937710796180714No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC32790.15345096191149638No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA30150.14109626415466958No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC24280.11362578088475547No Hit

[FAIL]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)