FastQCFastQC Report
Wed 8 May 2024
EGAF00001834047

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001834047
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1942632
Total Bases293.3 Mbp
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT99370.5115225117263589No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60270.3102491876999864No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT34830.17929283569919574No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.12.1)