FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001834247

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001834247
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences1836858
Sequences flagged as poor quality0
Sequence length151
%GC48

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT105580.5747858571539008No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT72800.39632894867213475No Hit
ATATATTACTGTGCGCGGGATATCACATTGAGTGATTCGAGTGCTCTTGA40610.22108404677988175No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT39200.21340789543884175No Hit
GTAATATATAGCCGTGTCGTCAGATCTCAGGCCGGTTAGCTCCATGTAGG33990.1850442440297508No Hit
CTCCTGGGAGTTACCCGATTGGAGGGCGTTATCCACCTTCCACTGTACTT25210.13724523071462247No Hit
GTATTACTGTCAGCAATATTCTATCGCGCCCCTCACTTTCGGCGGGGGGA24610.13397878333545654No Hit
ATATTACTGTGCGCGGGATATCACATTGAGTGATTCGAGTGCTCTTGACA24540.13359769780788716No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT24490.13332549385962333No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT23460.12771809252538846No Hit
CTCTAACACTCTCCCCTGTTGAAGCTCTTTGTGACGGGCGAGCTCAGGCC20400.11105921089164213No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)