FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001834660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001834660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences3518869
Sequences flagged as poor quality0
Sequence length151
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA53180.15112810394476178No Hit
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC38540.10952382711604211No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT38020.10804607957840999No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC37510.10659675026265542No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC36530.10381176451865642No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC35500.10088468766526971No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)