FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001835206

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001835206
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2517910
Sequences flagged as poor quality0
Sequence length151
%GC44

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTCATC41860.1662489922197378No Hit
CCTATATAGTATAGCTTCCCATCTTCTTTGAGAGTTGTTGGTTTATGCTC39150.15548609759681642No Hit
ATACTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATA39140.15544638211850303No Hit
ATTTAGGGCTATTGATATTTAACAAATATCCAGCAAAGGTTTTTCCAGGA35360.1404339313160518No Hit
CTATATAGGTGGCTATCTATCCCTACCAAGGCTTATATTGAAGTATAAAC28630.11370541441115846No Hit
TTGATATTCTCTGCATCCTATTTAGGGCTATTGATATTTAACAAATATCC27310.10846297127379455No Hit
CTATTAATGATATTAAAATCCCAACTATACCAAAGAATATCCCAATTATC25910.1029028043099237No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)