FastQCFastQC Report
Tue 6 Sep 2022
EGAF00001835678

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001835678
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences71094960
Sequences flagged as poor quality0
Sequence length101
%GC41

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATGC36641625.153898391672208TruSeq Adapter, Index 2 (100% over 50bp)
AGATCGGAAGAGCACACGTCTGAACTCCAGTCACCGATGTATCTCGTATG7812251.0988472319275515TruSeq Adapter, Index 2 (100% over 49bp)
GTACTGGATGCATCTGCAGGATATCGCGGCCGCGTCTTCAGAGGGGGATA710980.10000427597117996No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)