FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001835980

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001835980
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences374209992
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCT37158960.9929975359931063No Hit
GAAGAT36881690.985588059872009No Hit
TCGTGG36861760.9850554712071932No Hit
GGCTAC35898660.9593185849510935No Hit
TAGAGC35286630.9429633295307626No Hit
GCTGTC35195490.940527798627034No Hit
CCACTT33263530.888900101844421No Hit
ACCAGG33184590.8867905910967765No Hit
CGAAGC32957970.8807346330826996No Hit
GCGCAG32684110.8734162822675242No Hit
GGTACC32234050.8613893452636615No Hit
CGTACT31879730.851920864796149No Hit
TACGGC30319460.8102258263590141No Hit
CAGGAC30171730.8062780429444012No Hit
TTACGT29813070.7966935848148063No Hit
GTACTT29793770.796177831617067No Hit
TGTGAT29713560.7940343827056334No Hit
GCTCAA29546440.789568441026556No Hit
CCGTCG29136840.7786227151304929No Hit
GTGGTG28822430.7702207481407926No Hit
TTCTAC28650720.7656321480587296No Hit
GGTAAT28439370.75998424969903No Hit
CCTCGG28427830.7596758666989308No Hit
GAGAAG28111170.7512137730411004No Hit
AACATA27577800.7369605459386023No Hit
TAGCTT27520200.7354213032344684No Hit
CGAATT27371770.7314548137453262No Hit
GTCTCA27287640.7292066108165278No Hit
AAGGCG27256690.728379535092692No Hit
CTGTTC27246170.7280984095154787No Hit
GCACAT27045250.7227292316662672No Hit
CTGGAG26858450.7177373820632774No Hit
ACACGA26460750.7071096594342141No Hit
ACTAAT26408990.7057264788375827No Hit
ACTTGA26292610.702616460332251No Hit
TCATGT26202580.7002105919181335No Hit
TTAGTA25741710.6878947796776095No Hit
CAGCCT25634610.6850327502746105No Hit
AACCTT25455370.6802429262765384No Hit
CATACG25362440.6777595612679418No Hit
GTAAGA25091370.6705157675212478No Hit
CAGATC25062640.6697480167766338No Hit
ATCCGG25057380.6696074539880271No Hit
GAGTCG24949250.6667178999325064No Hit
GCCATA24622780.657993654001628No Hit
GATCAG24614880.6577825425890819No Hit
CTGAGG24533460.655606758891676No Hit
AACTAG24473800.6540124668824985No Hit
ACAGCC24392130.6518300024441892No Hit
TGATAA24276550.6487413623097482No Hit
CTGTAT24243530.6478589700512326No Hit
CGAGCC24095030.6438906099546374No Hit
CTTAGC23998460.6413099733584879No Hit
TACAGT23918010.6391601109357871No Hit
CACATT23865740.6377633016277128No Hit
GAATAC23721580.6339109191932No Hit
AACTCT23630350.6314729832227463No Hit
CCAGCG23549290.6293068197922411No Hit
CCATGA23292210.6224368803064991No Hit
GCTTCT23095380.6171769993784666No Hit
CCTTAT22887640.6116255709174115No Hit
CAAGGA22856860.61080303809739No Hit
ATTGAA22581640.6034483440517002No Hit
AGGACT22568260.6030907907985524No Hit
AAGCGC22189390.5929662615743302No Hit
GAGATA21874480.5845509331028232No Hit
TCTTCA21718160.5803735994307709No Hit
TCAATG21595590.5770981657806721No Hit
ATTCAT21512370.574874280748762No Hit
CAACGG21502800.5746185419869815No Hit
CGTGAA21156830.5653731982656411No Hit
CGTTGC21105580.5640036463804526No Hit
GTCTGC21046220.5624173712603591No Hit
TTGAAT21010880.5614729817262603No Hit
GACACG20955540.5599941329198928No Hit
ATGGCC20953230.5599324028739457No Hit
CATGAG20843310.556995014713557No Hit
CAGTCC20764090.5548780215361004No Hit
GGACTA20612590.5508294925486651No Hit
GACTTG20519190.5483335677471701No Hit
GGCCGT20157720.5386740180898216No Hit
TGCATA19987700.5341305798162653No Hit
AAGAGG19982190.5339833362867552No Hit
TCCAGA19939550.5328438691182784No Hit
GGCCAG19491740.5208770587825459No Hit
ACGAAC19331150.5165856180558642No Hit
ACTAGC19258890.5146546167051573No Hit
AGTTAG18669050.49889234384740855No Hit
CAGTAG18352520.4904337241748478No Hit
CCGGAA18148190.48497342101971447No Hit
ATGCCG17549720.46898052898598175No Hit
TCCACG17163080.45864836233448303No Hit
GAGCAC16636410.44457417908819497No Hit
GTCGAG16545020.44213196744356303No Hit
GTTGGC16015500.42798162375097665No Hit
CTACCG15461800.41318511879821745No Hit
AGTTCC13019460.3479185558465793No Hit
TGGCAT11563440.3090093863661449No Hit
GACTAA10615470.28367681854951643No Hit
CTATTA10450750.27927501198311133No Hit
GCGTAT10341690.2763606055714301No Hit
AAGCAT10007110.2674196364056468No Hit
TAAGTC9892740.2643633310571782No Hit
TGACCA9818090.26236846182343526No Hit
CCGCTC9780480.26136341116193396No Hit
CGATGT9722380.2598108069759933No Hit
GCCAAT9367530.2503281633377657No Hit
TAATGA9072000.2424307259010871No Hit
AGGTCA8601570.22985944212841866No Hit
CATAAC8561420.22878651513933917No Hit
AGGCTT8537060.2281355437457159No Hit
GCATAA8527660.22788434788774964No Hit
CTTCAC8502150.22720264508597088No Hit
TCTCTG8334930.2227340311105322No Hit
ACAGTG8136030.21741883364781986No Hit
TCCTCC8103710.21655514746383364No Hit
ACCGCT8068810.21562251603372473No Hit
TTAGGC8065290.21552845120180542No Hit
AATCGG8051740.21516635504484335No Hit
TGCGGA8042770.21492665006123085No Hit
TCAAGC7948180.212398924933036No Hit
AGTAGG7855420.2099201028282537No Hit
CTATGC7532820.20129927476655943No Hit
GTTACA7526860.20114000590342332No Hit
TGTGTG7526240.20112343766598303No Hit
AGTGCA7516610.2008660955263856No Hit
TTAGCG7514090.20079875365807978No Hit
TACTCG7431990.1986047983454167No Hit
CTCCGC7418680.1982491156997219No Hit
CTAGTT7378650.19717939546627605No Hit
GGCGTT7301320.1951129086900491No Hit
CGAGAG7262350.1940715147980335No Hit
GCGGCT7166870.19152000623222268No Hit
TATGGT7135010.19066861261149862No Hit
ATTGCT7124400.19038508196756007No Hit
CCTGAC7029050.18783704738701898No Hit
TGCGAC7027380.18779242003778457No Hit
AATTGC7011820.1873766107239595No Hit
AAAAAA6960390.1860022487053205No Hit
TTCCAT6902040.18444296377847655No Hit
AGATGC6880790.18387510080169106No Hit
CAAGCT6768280.18086850016554343No Hit
CACCTA6745260.18025333754316214No Hit
AGCCTA6744090.1802220716757344No Hit
GGATTC6627520.17710697580731624No Hit
AGGTGT6616380.17680928199266255No Hit
GACCAT6594720.17623046260079556No Hit
CGTCTC6556350.17520510248694804No Hit
ATGTGA6474970.17303038770808662No Hit
GATCCT6405670.17117848632967556No Hit
TGACAC6402590.17109617960174617No Hit
GAGCCA6399220.1710061232143689No Hit
GACCGA6279620.167810056766202No Hit
CGCTTG6273020.16763368520635333No Hit
ATTCGA6269010.16752652612226346No Hit
GAGTGA6093750.16284305951937275No Hit
AATGTA6082960.1625547187419838No Hit
AGTCAA6035270.16128030060725904No Hit
GGCAGG6025480.1610186827934835No Hit
AGACGG5989860.16006681082957294No Hit
AGAGGT5878720.15709682065357572No Hit
TACGAA5874490.15698378251749087No Hit
ATCCAC5858760.15656343029985154No Hit
AGAACG5830520.15580877380740812No Hit
TATTCT5761240.1539574068882693No Hit
TTCACA5733110.15320568992182337No Hit
ACGTAA5669680.15151065233982314No Hit
TATAAG5583310.14920258997253072No Hit
GGTGGT5559180.1485577648605385No Hit
TCTCGC5549210.1482913369133126No Hit
GAACCG5526840.14769354421728No Hit
GATTCA5503190.14706154612782227No Hit
AAGTTG5492790.14678362730624253No Hit
ACCTGC5409160.14454878585925093No Hit
GGATCG5407240.14449747776911312No Hit
ACGCTA5337770.14264103348688775No Hit
TTCGTT5336220.14259961289328693No Hit
ATACCT5321610.14220919039489463No Hit
CGTCAG5314830.14202800870159554No Hit
AACAAT5267120.14075305610759853No Hit
TTCTGT5257330.14049143829382302No Hit
CATTAA5251380.14033243666032308No Hit
TCGGAC5154410.13774111087872823No Hit
CGACAA4869740.13013388482689153No Hit
TATTGG4843910.1294436306767565No Hit
GGAGGC4809530.12852489518772658No Hit
CCGACT4801080.12829908614519306No Hit
CTCGTC4606840.12310841769291932No Hit
ATCAGC4500780.12027418017207835No Hit
GCCTGG4412680.1179198870777347No Hit
GTACGC4382470.1171125863469728No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)