FastQCFastQC Report
Tue 5 Sep 2023
EGAF00001836004

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836004
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398264787
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAGAGC51171351.2848575036085226No Hit
CCTTAT48725771.223451622902328No Hit
ACAGCC40099651.0068590372264068No Hit
CATGAG39572980.9936349205786048No Hit
GCTGTC36446330.9151281054631626No Hit
CATACG36404950.9140890982159566No Hit
CTGAGG33946380.8523570525957647No Hit
GAATAC32815550.8239631288316734No Hit
CTATTA31897160.8009033447388357No Hit
CAGATC31815140.7988439108476844No Hit
TCCAGA31612800.7937633713020177No Hit
GCTCAA31248780.7846232210330962No Hit
TAGCTT30981990.777924411379106No Hit
GATCAG30543830.7669226855348374No Hit
GTCTCA30155470.7571713840721751No Hit
GGCTAC30096250.7556844336328434No Hit
AAGCGC29395580.7380913643264173No Hit
GAAGAT29350170.7369511681182097No Hit
CCTCGG29247310.7343684642649564No Hit
GTCTGC29000360.7281678156497426No Hit
GAGCAC28898740.7256162468614128No Hit
GGTAAT28659870.7196184783466685No Hit
GTACTT28309460.710820060524206No Hit
TTCTAC27642410.6940711532199807No Hit
CGTTGC27453980.6893398787977708No Hit
CGTGAA26962470.6769985918940907No Hit
CACATT26810730.6731885638686907No Hit
CAAGGA26759780.6719092642252603No Hit
ACTTGA26061080.6543656594977854No Hit
ATGGCC25936870.6512468801315342No Hit
GCACAT25936000.6512250353682411No Hit
CTTAGC25797650.6477512158261685No Hit
AGGACT25794200.6476645900406957No Hit
TACGGC25754790.6466750473724407No Hit
ACCAGG25450370.6390313889337146No Hit
GACACG25391230.6375464472082489No Hit
AACCTT25080440.6297428449279399No Hit
CGTACT25032590.6285413829468183No Hit
GGCCGT24969680.6269617805804156No Hit
TGATAA24724440.6208040682240883No Hit
TCTTCA24447060.6138393550720818No Hit
CAGCCT24277520.6095823882114891No Hit
AACATA24079100.6046002756452581No Hit
ACACGA23930840.6008776266730305No Hit
ACTAGC23881400.5996362415038214No Hit
TGTGAT23721970.5956331258580488No Hit
GGCCAG23679200.5945592172074203No Hit
TACAGT23358220.5864997549984252No Hit
CGAATT23332830.5858622394351926No Hit
GCTTCT23269310.5842673206255616No Hit
GTGGTG23132870.5808414591270405No Hit
TTGAAT23126090.5806712206268941No Hit
AACTAG22926360.5756562153711069No Hit
TTACGT22910320.575253468240967No Hit
TGTGTG22888320.5747010719278076No Hit
TCAATG22850960.5737630025523698No Hit
ATGCCG22691890.5697689261189942No Hit
GACTAA22683710.5695635351261923No Hit
CAGTAG22603610.5675523103678257No Hit
GTTGGC22562980.5665321348131137No Hit
CCACTT22499720.5649437443235472No Hit
TTAGGC22488120.5646524808129723No Hit
TCGTGG22380300.5619452367000249No Hit
GAGAAG21853440.5487163493567911No Hit
CTGTTC21447220.5385166025235367No Hit
GGCGTT21438010.5382853493397095No Hit
CCGGAA21205220.5324402430787837No Hit
TCCACG21085540.5294352071351968No Hit
CTGTAT21071800.5290902105287053No Hit
CCTGCT20976680.5267018497419909No Hit
GCCAAT20859690.5237643568021493No Hit
CAACGG20562150.5162934477559022No Hit
AGACGG20502200.5147881678025429No Hit
GGACTA20389460.5119573877868344No Hit
CGAGCC20321440.5102494788222389No Hit
AACTCT20123870.5052887088408345No Hit
CGATGT19682120.4941968419618277No Hit
GGTACC19538900.49060074196316034No Hit
TCTCTG19351040.4858837796272458No Hit
CATTAA18654590.4683966699772531No Hit
ATCCGG18464960.46363526484705264No Hit
GTAAGA18397630.4619446810395517No Hit
GACCGA18261310.45852183261182966No Hit
TTAGTA17891110.4492265091967571No Hit
CACCTA17867440.44863218098164426No Hit
GAGTCG17755760.4458280164246607No Hit
GAGATA17579240.4413957892792566No Hit
GGTGGT17542230.44046650802698256No Hit
GCATAA17448050.43810174962819404No Hit
TGCGGA17037220.42778625065840936No Hit
ACGAAC16901220.42437143708615144No Hit
CTGGAG16646590.41797795193979825No Hit
CAAGCT16376760.4112028111588987No Hit
TGGCAT16308090.40947858139414167No Hit
CCGCTC16161950.40580916333936395No Hit
TTCTGT16038170.4027011808101427No Hit
TCATGT15958590.40070301269190545No Hit
ACAGTG15858750.3981961377870949No Hit
AGTAGG15845430.39786168692840024No Hit
CAGGAC15828370.39743332869646847No Hit
AGCCTA15694420.3940699884170277No Hit
ACTAAT15556030.39059516451802206No Hit
TACTCG15525090.38981829443033333No Hit
CCATGA15248360.3828699020784883No Hit
CCAGCG15164740.38077029391001616No Hit
CATAAC15161960.3807004911031715No Hit
TGCATA15009490.3768721335637438No Hit
CGCTTG14892540.37393564498083537No Hit
GTCGAG14742740.37017432826668656No Hit
GTTACA14725750.36974772765938757No Hit
ATTGAA14626820.36726370187480323No Hit
GGAGGC14447280.3627556457809563No Hit
AAGTTG14444880.3626953843649752No Hit
AGGCTT14433350.3624058784790331No Hit
TATGGT14364320.36067260950187896No Hit
AAGCAT14350550.36032685962768785No Hit
GCGCAG14310070.35931045041147464No Hit
AACAAT14161030.3555682164790532No Hit
TTCGTT14148210.3552463200820212No Hit
CCGACT14048030.35273090814328006No Hit
AAGGCG13920410.3495265073484892No Hit
GTACGC13911020.3492907345584635No Hit
TCCTCC13739290.3449787791557882No Hit
AATGTA13691410.34377656390696676No Hit
TATAAG13621710.3420264719511846No Hit
TAAGTC13514010.33932224090903623No Hit
ATTGCT13304270.3340558953307614No Hit
CTACCG13242750.33251119436778126No Hit
TATTCT13217900.3318872376231444No Hit
GCGTAT13132240.32973640725108844No Hit
CTATGC13043350.3275044750566914No Hit
ATGTGA12942080.3249616943915255No Hit
ATCAGC12890650.3236703424648989No Hit
ACGTAA12870870.32317368796152196No Hit
ATACCT12658790.31784858750266565No Hit
ACCGCT12508410.3140727076129881No Hit
ATTCAT12454970.3127308867504774No Hit
AAGAGG12127740.30451449377069834No Hit
AGGTGT12108740.30403742422751523No Hit
GAGCCA12043920.30240986381756113No Hit
TGACCA11855470.29767808721688466No Hit
AGAACG11754610.29514560121028227No Hit
TGCGAC11663000.29284537274444No Hit
GCGGCT11602130.29131699258162136No Hit
AGTTCC11512080.28905593403616675No Hit
CGTCTC11507540.2889419395242693No Hit
TAATGA11460060.2877497678447781No Hit
TTAGCG11396820.28616187953367817No Hit
CTCCGC11332220.2845398430868557No Hit
GACCAT11246390.28238474419783444No Hit
ACCTGC11097670.27865054512087706No Hit
AGATGC11048930.2774267361979958No Hit
CGAGAG10976530.27560885014923503No Hit
CGTCAG10820280.27168558087963723No Hit
GGATCG10780070.27067595107272185No Hit
AATCGG10721010.2691930180611223No Hit
GATCCT10613560.26649506424980524No Hit
TCTCGC10550320.26490717593870533No Hit
AGGTCA10486240.263298196132012No Hit
ACGCTA10437910.26208468186769424No Hit
CTAGTT10079700.2530904144432935No Hit
CTTCAC9959630.2500755860196096No Hit
AGAGGT9753250.24489360642370828No Hit
GAGTGA9727890.24425684412817547No Hit
CCTGAC9688360.24326428838912137No Hit
GCCTGG9457120.23745810095934994No Hit
GGATTC9404930.23614766625099595No Hit
TATTGG9385960.23567134997551265No Hit
ATTCGA8907170.22364944857653207No Hit
TTCACA8642360.2170003545907261No Hit
TCAAGC8588520.21564849015888518No Hit
AGTCAA8529120.21415702011335488No Hit
AATTGC8215540.2062833639369679No Hit
GATTCA8151800.20468292116420525No Hit
TGACAC8131270.20416743496833428No Hit
ATCCAC7737990.19429259760291084No Hit
GGCAGG7733380.19417684546638064No Hit
CTCGTC7073230.17760118973310085No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)