FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001836008

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836008
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413918740
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATCAG51758551.2504519606916082No Hit
CTATTA40520680.9789525354662608No Hit
TTACGT37110090.8965549614883347No Hit
ACTTGA36599680.8842237971636656No Hit
GGCTAC34750340.8395449792874805No Hit
CGAATT34414760.8314375908662652No Hit
GAGAAG33932330.8197824046333346No Hit
TGCATA31864040.7698139011536419No Hit
CAACGG31641100.7644278198179671No Hit
TCGTGG31380760.7581381794890466No Hit
CGTCTC30706650.741852132619074No Hit
GACTAA30175070.7290095152492975No Hit
ACTAAT28859250.6972201838457471No Hit
AGGACT28849760.6969909117910438No Hit
GCACAT28678600.6928558006337185No Hit
CCTCGG28587080.6906447386267169No Hit
CCACTT28494130.6883991287758559No Hit
GGCCAG28408540.6863313316038795No Hit
GACTTG28407150.686297750133275No Hit
TGTGAT28204250.6813958217982592No Hit
CAGATC27741710.6702211646662821No Hit
TAGCTT27702490.6692736356899425No Hit
CATACG27671260.6685191397712508No Hit
CAGCCT27601840.6668419989875307No Hit
CCTTAT26797090.6473997770673539No Hit
TGCGAC26143010.6315976416047265No Hit
CAGTCC26141210.6315541548082602No Hit
GCCATA25502260.6161175500292642No Hit
CTCCGC25485020.6157010431564418No Hit
GCTTCT24946070.6026803715144669No Hit
ATCCGG24855060.600481630766464No Hit
TTGAAT24854780.6004748661536804No Hit
GCTCAA24639390.5952711877698507No Hit
AGTTCC24581170.593864631497477No Hit
ATGCCG24494370.5917676015345428No Hit
AAGAGG24294870.5869478149261858No Hit
TTAGCG24181030.584197516643001No Hit
AACTAG24100640.5822553479941497No Hit
TCAATG24011510.5801020267891229No Hit
GTCTGC23875500.5768161161294606No Hit
ATTCAT23633610.5709722154643204No Hit
GAAGAT23529860.5684656848346611No Hit
CGTACT23488540.5674674212624439No Hit
TTAGTA23473790.5671110711247334No Hit
GTCTCA23416950.5657378547296505No Hit
GGTACC23393740.565177116648548No Hit
ACAGCC23291250.5627010267764151No Hit
GTGGTG23200000.5604964877888834No Hit
TTCTAC23116510.5584794252127845No Hit
AGTTAG22908740.5534598409339958No Hit
GGACTA22891690.5530479243341337No Hit
ACGAAC22758270.5498245863427202No Hit
GTAAGA22683590.5480203674759929No Hit
TACGGC22544600.5446624620088474No Hit
TACAGT22474870.5429778318324027No Hit
GAGTCG22435890.5420361010955919No Hit
CAGTAG22365780.5403422903732265No Hit
AATCGG22292880.538581075116338No Hit
ACAGTG21843660.5277282202782121No Hit
CCGTCG21724740.5248551925916667No Hit
TACTCG21479000.5189182785007512No Hit
ACGCTA21223100.5127359056031143No Hit
AATTGC21213710.512509049481548No Hit
CCTGCT21056410.5087087866570139No Hit
CTACCG20926640.5055736302251017No Hit
TTCTGT20714380.5004455705484608No Hit
CTGTAT20656140.4990385310894597No Hit
TGCGGA20453620.4941457833003647No Hit
CTGAGG20230060.48874472317924045No Hit
TATTCT20208520.4882243311815261No Hit
GAATAC20081840.4851638270835478No Hit
CGAGCC20061250.4846663864506352No Hit
AGACGG20016760.48359153779797454No Hit
TGTGTG19972920.4825323927107045No Hit
TCTCGC19878850.4802597244087088No Hit
GGTGGT19831010.47910394199595796No Hit
GAGATA19419300.4691573036775286No Hit
AAGGCG19306160.466423916926303No Hit
ACCTGC19290160.4660373676243796No Hit
GAACCG19054470.4603432548137347No Hit
CGTGAA18991030.4588105868316085No Hit
CAGGAC18781850.4537569378955879No Hit
AGGTCA18458240.4459387366708741No Hit
CTTAGC18361760.4436078443802761No Hit
TAGAGC18353060.4433976581973554No Hit
AACCTT18276600.44155043572078906No Hit
CCATGA18264320.44125375913156284No Hit
CGAAGC18248870.4408804974618931No Hit
GAGCAC18128880.43798161929078155No Hit
AACTCT18113400.4376076328411707No Hit
TCATGT18063910.436411987531659No Hit
GTACTT18039170.43581428567355995No Hit
CTGTTC18025590.43548620195355253No Hit
CCGCTC18006670.43502910740402817No Hit
CGTTGC17936910.4333437524476422No Hit
CCAGCG17708890.42783494170860686No Hit
ATTGAA17690610.4273933091311594No Hit
ACCGCT17613990.42554222116157386No Hit
CTGGAG17581330.42475317739902285No Hit
CACCTA17466000.4219668817120964No Hit
GGCGTT17435800.4212372699047161No Hit
TGATAA17240760.4165252339142702No Hit
TACGAA17232890.4163350999763867No Hit
TGGCAT17117160.4135391405569122No Hit
GGATCG17049930.41191490870889297No Hit
ATCAGC17004160.4108091361120785No Hit
CATGAG16800180.4058811156991829No Hit
GTTGGC16760100.4049128096978648No Hit
AGATGC16732950.40425688385116365No Hit
CCGGAA16700390.4034702560217496No Hit
AGGCTT16634260.4018725994382376No Hit
GCGCAG16625210.4016539574893372No Hit
TCTTCA16595820.40094391474036667No Hit
CTTCAC16459380.39764761556821515No Hit
TCTCTG16451610.3974598975634686No Hit
TGACCA16439810.39717481745330013No Hit
CTAGTT16394640.3960835404553077No Hit
GACCGA16387180.395903311843286No Hit
AGAGGT15969110.3858030201773421No Hit
ACTAGC15959460.38556988262961955No Hit
GCCAAT15741390.38030145723771774No Hit
GGTAAT15550860.3756983798317515No Hit
AGCCTA15526640.37511324082596503No Hit
GATTCA15390280.37181887440032313No Hit
CTATGC15381840.37161496964355856No Hit
AGTGCA15381150.3715982997049131No Hit
TTCCAT15377280.3715048030925104No Hit
TATAAG15020680.36288958552589334No Hit
AAGTTG14990370.3621573161920622No Hit
ACACGA14845000.35864527419077474No Hit
CATAAC14665950.35431954590893855No Hit
CATTAA14644410.35379915391122424No Hit
ATTCGA14403480.34797844620419943No Hit
TCCACG14337660.3463882790134121No Hit
CCGACT14267870.3447021992770851No Hit
TCGGAC14232670.3438517908128538No Hit
TGACAC14229340.343771340239391No Hit
AACATA13816310.33379281160355295No Hit
GATCCT13556270.3275104190740434No Hit
CACATT13478700.32563637973965615No Hit
GCATAA13451160.32497103175372055No Hit
AAGCGC13325520.3219356533603673No Hit
GAGCCA13309520.32154910405844395No Hit
CAAGGA13307400.32149788627593906No Hit
CGATGT13039220.31501883678907605No Hit
TTCACA13029110.3147745859489232No Hit
ATCCAC12998790.31404207502177844No Hit
ACCAGG12964430.313211960395898No Hit
GGCCGT12906960.311823523622052No Hit
TCCAGA12828050.30991711078362866No Hit
AGTCAA12809640.3094723374931031No Hit
TTAGGC12736410.30770314965686263No Hit
CTCGTC12655000.3057363384900138No Hit
TTCGTT12556560.30335809390993024No Hit
ATACCT12556090.30334673902418624No Hit
AGGTGT12548700.3031682015653604No Hit
CGCTTG12437320.3004773352373463No Hit
TCAAGC12412390.299875043106287No Hit
GCGGCT12240920.295732442556237No Hit
AGTAGG12164400.2938837705197885No Hit
TAATGA12050510.29113226427003525No Hit
CGACAA12009210.2901344838844455No Hit
CAAGCT11925770.28811862927491516No Hit
GACACG11864090.2866284817160006No Hit
CCTGAC11590970.2800300851321687No Hit
AGAACG11413220.27573576398111377No Hit
CGAGAG11301270.2730311268342187No Hit
GGATTC11169020.2698360552605084No Hit
CGTCAG11124580.26876241457441624No Hit
GGCAGG10982020.265318260294279No Hit
GACCAT10972990.265100101532006No Hit
ACGTAA10913650.2636664868084977No Hit
GTACGC10901220.26336618631956604No Hit
AATGTA10858910.2623440050092924No Hit
GTCGAG10764070.26005273402214163No Hit
ATGTGA10650290.2573038852988391No Hit
AAGCAT10364030.25038803510080265No Hit
TAAGTC10120770.24451103615168523No Hit
AACAAT10073850.24337748032379497No Hit
GTTACA10073830.24337699713716754No Hit
GGAGGC9947760.2403312302313251No Hit
GCGTAT9756500.23571051651345865No Hit
TATTGG9736390.23522467235960373No Hit
TATGGT9722400.2348866833137345No Hit
ATTGCT8998190.21739025394211434No Hit
GCTGTC8965710.21660555885920993No Hit
GCCTGG8759600.2116260790704958No Hit
GAGTGA8679500.20969091662774195No Hit
ATGGCC7121810.17205816774567878No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)