FastQCFastQC Report
Wed 13 Sep 2023
EGAF00001836010

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836010
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411942581
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TGTGAT56203311.3643481541423852No Hit
CTGTAT51369321.2470019456425165No Hit
GGTAAT49216341.1947378656638556No Hit
GGCTAC47845731.161465995669916No Hit
ACTTGA47778981.1598456242133415No Hit
CCGTCG45818571.1122562248547934No Hit
GATCAG40304170.9783929085981038No Hit
GTCGAG39207580.9517729365297151No Hit
ATTCAT38404100.9322682764858435No Hit
TAGCTT38224570.9279101448364233No Hit
CAACGG38056800.9238374898660938No Hit
TTAGTA37877830.9194929523442492No Hit
AAGCGC37535920.911193009202416No Hit
GGCCGT36780290.8928499188094371No Hit
TCCAGA36683500.8905003195093347No Hit
CTCCGC34925490.8478242262603097No Hit
CTATTA34925080.8478142734169062No Hit
GCCAAT34728670.8430463759219881No Hit
CTTAGC33816190.820895716046407No Hit
CTTCAC33580920.8151844831986426No Hit
AAGTTG33434340.8116262203056887No Hit
TCTCGC32175110.7810581251856554No Hit
CGTACT31134740.7558029064249612No Hit
TCATGT31097330.7548947701524451No Hit
AACTCT30931980.7508808612334251No Hit
GTCTCA30322860.7360943344674533No Hit
GTAAGA30224770.7337131773711929No Hit
TTCTAC29856110.7247638718853392No Hit
CGTCTC27675000.6718169297482748No Hit
TACTCG27369250.6643947788441904No Hit
ACCAGG27225060.6608945337457115No Hit
CAGATC26727510.6488163941469308No Hit
CCTCGG26585660.6453729530815364No Hit
AGGTGT26567000.64491997733053No Hit
TACAGT26168250.6352402302397576No Hit
AGTGCA25982960.6307422732781295No Hit
ACGAAC25648960.6226343471883039No Hit
ACTAAT24905250.6045806175108662No Hit
TGATAA24746030.6007155157383451No Hit
ACAGCC24370820.5916072075103107No Hit
GCGCAG24363290.5914244150448724No Hit
TTCGTT24242590.5884943950477408No Hit
CAGTCC23766190.5769296765172232No Hit
TCAAGC23620720.5733983591271425No Hit
CAAGGA23487550.5701656270391722No Hit
GAGTCG23486540.5701411090590802No Hit
CGAAGC23443040.5690851366491778No Hit
TGGCAT23424390.5686324036504495No Hit
CACATT23414200.5683850390790264No Hit
CATGAG23085920.560415967292296No Hit
GCATAA23083800.5603645038093307No Hit
ACGTAA23050050.5595452148706133No Hit
AGAGGT22987160.5580185457934003No Hit
TACGGC22839330.554429938865679No Hit
ACCGCT22591310.548409196863288No Hit
GTACTT22545360.5472937501452417No Hit
AATCGG22530210.5469259804438619No Hit
CCGCTC21917910.532062258453442No Hit
CATACG21487310.5216093453567987No Hit
TGCATA21142650.5132426453384774No Hit
GGACTA21134890.5130542695706419No Hit
GAGCAC21117630.5126352791385749No Hit
ATTGCT21067040.5114071953634722No Hit
TTAGCG20990550.509550383187991No Hit
ATGCCG20970290.5090585670724823No Hit
ATTGAA20928380.5080411922748039No Hit
TCCTCC20416360.4956117901295569No Hit
TTGAAT20090050.4876905405416198No Hit
GCCATA20045810.48661660446313515No Hit
GAGCCA20028050.4861854764171612No Hit
GATCCT19926010.483708432171036No Hit
CGATGT19898780.48304741771766485No Hit
GACTAA19841760.48166324422771917No Hit
GTCTGC19838000.48157196937113916No Hit
TGACCA19818210.481091562612703No Hit
AGTTAG19572020.4751152442772116No Hit
TCGTGG19534100.4741947276385104No Hit
CCAGCG19445340.47204005841775315No Hit
CGCTTG19313040.4688284457779809No Hit
CGAGCC19076690.46309099568417766No Hit
GCTTCT19021510.4617514886134095No Hit
GAATAC19016140.4616211306400491No Hit
TTCACA18991590.461025173797219No Hit
GACCGA18813800.4567092810441949No Hit
AGGCTT18796370.4562861638233995No Hit
AGACGG18772230.4557001598239731No Hit
GACCAT18727960.454625495488654No Hit
AACCTT18726630.4545932094356616No Hit
TATGGT18587790.45122283680598685No Hit
GATTCA18412400.4469652045997158No Hit
GCGTAT18108570.439589662133034No Hit
AGTTCC17832650.4328916412746368No Hit
GAAGAT17314520.4203139174874472No Hit
CGAATT17094010.4149609870022153No Hit
ACAGTG16984320.4122982372633141No Hit
GAGATA16742780.40643479873715704No Hit
GACTTG16690700.4051705448726117No Hit
AACTAG16677130.40484113003117783No Hit
GCGGCT16632280.40375238606372665No Hit
CCTGCT16502070.4005915086500854No Hit
GCTCAA16478020.4000076894211623No Hit
AAGAGG16319410.3961573955376077No Hit
GTTGGC16228420.3939485925588256No Hit
CTCGTC16221050.3937696841298375No Hit
ATGGCC16206070.39340604121718603No Hit
GGCCAG16202930.39332981700185055No Hit
GGCGTT16150670.39206119359629876No Hit
TTAGGC15982370.387975672755228No Hit
GCACAT15811080.38381756898299374No Hit
AACATA15797690.3834925236825663No Hit
CCATGA15627310.37935651036764273No Hit
TTCTGT15564080.37782158771297303No Hit
GTGGTG15551160.3775079517696181No Hit
TAATGA15549070.37745721654348713No Hit
CCACTT15501420.37630050193815723No Hit
GGATTC15494790.37613955717775144No Hit
CAGCCT15478740.37574993977133914No Hit
TCCACG15420390.37433348022840107No Hit
TAGAGC15387230.3735285136740938No Hit
GTACGC15374260.3732136639693482No Hit
GACACG15341520.3724188930107228No Hit
TCTCTG15126370.36719607774657315No Hit
TCTTCA14920690.36220314888982064No Hit
GGCAGG14529570.352708621787268No Hit
TGCGGA14524000.3525734087683448No Hit
GGTACC13993190.3396878750924756No Hit
CGTGAA13914150.3377691610860689No Hit
AGTCAA13859830.33645053071122066No Hit
AGTAGG13858510.33641848741050634No Hit
CTGAGG13838150.3359242437722164No Hit
AAGCAT13699210.3325514436197602No Hit
TTACGT13573850.3295083010610161No Hit
CCTTAT13468820.3269586738837275No Hit
CAAGCT13450980.32652560381952844No Hit
TAAGTC13213200.3207534401499514No Hit
CTGTTC13125200.3186172201023327No Hit
GGATCG13002650.31564229093374546No Hit
CGAGAG12997550.3155184872718948No Hit
CAGTAG12816230.3111169029646877No Hit
GCCTGG12689560.30804195985750743No Hit
ACACGA12636830.30676192709488315No Hit
CAGGAC12500010.3034405904253923No Hit
CTACCG12456560.30238583177688055No Hit
TCGGAC12452320.3022829048109498No Hit
GCTGTC12360120.30004472880651295No Hit
CACCTA12035280.2921591638034622No Hit
TGACAC11744680.2851047826007576No Hit
CTAGTT11661140.28307683006918866No Hit
ACTAGC11612510.2818963257406012No Hit
ATCCAC11397650.2766805502925176No Hit
CCTGAC11154840.2707862822270369No Hit
CGACAA11045290.2681269310200297No Hit
CGTTGC10663110.25884942445413284No Hit
AGCCTA10495890.25479012085910097No Hit
CTATGC10292360.2498493837421483No Hit
ATTCGA10246170.2487281109694266No Hit
TCAATG10121740.24570754437254932No Hit
GGTGGT10112860.24549198034956235No Hit
GGAGGC10089130.24491592919353972No Hit
TACGAA9873420.23967951980181432No Hit
AGAACG9742420.23649946495820007No Hit
CATTAA9659570.2344882623338227No Hit
TTCCAT9536900.23151042013789783No Hit
AGGACT9512930.23092854292719986No Hit
ACGCTA9390100.22794681669482475No Hit
TATTGG9199240.22331364671427353No Hit
CCGGAA9128720.22160175764884088No Hit
CGTCAG8921940.21658212604149316No Hit
ATCCGG8857640.21502122889306266No Hit
AGGTCA8722850.2117491709360339No Hit
ATGTGA8582840.2083503962898169No Hit
AATTGC8507770.20652805493783125No Hit
TGCGAC8423250.2044763126830047No Hit
AGATGC8399750.20390584482937926No Hit
CATAAC8207060.1992282511819287No Hit
ATACCT8180450.19858228736980213No Hit
TATAAG7734750.18776281833316957No Hit
GTTACA7420590.18013651276317075No Hit
CCGACT7381730.1791931774103246No Hit
TATTCT7201060.17480737200119645No Hit
GAGAAG7066550.1715421111079556No Hit
GAACCG6933360.16830889351542902No Hit
ATCAGC6597100.16014610541074412No Hit
AACAAT6268420.1521673235328882No Hit
AAGGCG6122370.14862192651067554No Hit
ACCTGC5287980.12836691917507795No Hit
CTGGAG5230650.12697522036450998No Hit
GAGTGA5101200.1238327921240072No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)