FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001836012

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836012
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences412625372
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAT71978581.7444050919874117No Hit
TGATAA53222541.2898513666774711No Hit
CCTCGG48821921.1832020838505297No Hit
CGTGAA45200721.095442090264871No Hit
CGTTGC43460891.0532772085571123No Hit
ATTCAT40666430.9855533071776303No Hit
AACTCT40534620.9823588841260106No Hit
TAGAGC40351440.9779195061228566No Hit
AGGACT39727400.9627958602603817No Hit
GCTTCT37914330.918856002873231No Hit
GTCTGC37742570.9146933892373443No Hit
CCACTT36976410.8961254568708393No Hit
ATTGAA36699960.8894256749679464No Hit
GAGAAG35986440.8721334760771813No Hit
GTTGGC35071550.8499610634704258No Hit
GGCTAC34167540.8280523282993854No Hit
TCAATG33071100.8014800408347162No Hit
CAGCCT32326130.7834256493563366No Hit
TGTGAT31264200.7576897137580769No Hit
GTAAGA31243870.757197015020201No Hit
CATGAG30887750.7485664260122133No Hit
ACTAGC30579220.7410891834348956No Hit
AAGGCG30439160.7376948211512306No Hit
GAGCAC29789940.7219609365174956No Hit
GAATAC29715580.7201588175726625No Hit
AACATA29333760.7109053875630313No Hit
AAGCGC28659850.6945731393366669No Hit
CCTTAT28478570.6901798079445294No Hit
GTGGTG28182360.6830011412870656No Hit
ACTAAT28157860.6824073823555378No Hit
TTCTAC27635350.669744321975431No Hit
TTCTGT27620290.6693793419954797No Hit
TACAGT27262960.6607194285667921No Hit
TTAGTA26969420.6536054695153355No Hit
CAGATC26965180.6535027128675935No Hit
AACCTT26876130.651344580914428No Hit
CGTACT26769120.6487511873118651No Hit
CCTGCT26714610.6474301342768617No Hit
TCTTCA26506740.6423923926810783No Hit
TTACGT26366570.6389953645409862No Hit
TGTGTG26262450.636472010257285No Hit
TGCATA25973780.629476075940381No Hit
CTGAGG25528710.618689778485071No Hit
ACCAGG25512100.6182872341645536No Hit
ATGCCG25257670.6121211082482829No Hit
GAGTCG25035830.6067448028862364No Hit
TAGCTT24556660.5951320899384733No Hit
ACTTGA24535260.5946134596880776No Hit
GTCTCA23686060.5740330480695696No Hit
TTCGTT23489380.5692664967776145No Hit
GAAGAT23374460.5664814038628725No Hit
GCTGTC23342590.5657090325507177No Hit
CTTAGC22733620.5509506090187785No Hit
GATCAG22239770.5389821254132671No Hit
ATCAGC21948860.5319319045654808No Hit
CCGGAA21937180.5316488390830217No Hit
GGTAAT21764460.5274629597910426No Hit
CGAATT21729720.5266210338611945No Hit
TATAAG21351360.5174514571537303No Hit
GACACG21293130.5160402497013683No Hit
CAAGGA21231010.5145347678717149No Hit
GGCCAG21072870.5107022357316409No Hit
TACGGC21038590.5098714579286704No Hit
TTGAAT20876820.5059509525264966No Hit
TCATGT20857880.5054919405198379No Hit
AACTAG20726110.5022984868705553No Hit
GACCGA20425510.495013428306585No Hit
GTACTT20410360.494646267171375No Hit
GCTCAA20207940.4897406066440335No Hit
CCGCTC20128130.48780640663075847No Hit
ACGAAC20027850.4853761149714274No Hit
CAGTCC19899700.4822703922336603No Hit
CAACGG19842760.4808904480066728No Hit
GACTTG19756600.4788023553723691No Hit
TCGTGG19636310.4758871201938596No Hit
GACCAT19427730.4708321717065911No Hit
CACATT19328210.46842029869166646No Hit
GGCAGG19266110.4669153015631817No Hit
TCCAGA19123930.4634695609556458No Hit
GCCATA18952190.45930743202092766No Hit
ACGCTA18838040.4565410001011765No Hit
ACAGCC18536100.4492234665589105No Hit
CTTCAC18378060.4453933579246794No Hit
GCGTAT18224700.44167666936389943No Hit
TCCTCC18176040.44049739142070987No Hit
ATACCT18036420.437113692562754No Hit
AAGTTG17517070.4245272149672852No Hit
CTGTTC17481710.42367026330121066No Hit
CAGGAC17369700.4209556944064991No Hit
AATGTA17173150.41619229367213995No Hit
GGCCGT17168650.4160832359092063No Hit
CCGTCG17154470.4157395827806731No Hit
GCACAT17036580.4128825117423947No Hit
CCATGA16731620.405491788323671No Hit
CGAAGC16678720.40420975373273943No Hit
CCTGAC16344480.39610942780319386No Hit
CGAGCC16239230.3935586879034671No Hit
ATCCGG16021540.38828295803390395No Hit
CATTAA15970080.38703582192711117No Hit
GGTACC15946780.38647114506569896No Hit
AGTTAG15825380.38352900897233244No Hit
CTCCGC15531690.3764114146621115No Hit
ATGGCC15268960.3700441377608743No Hit
GCGCAG15160580.36741754212826255No Hit
GAGATA15122250.3664886123386518No Hit
CTAGTT15041890.3645410830432405No Hit
CAGTAG14883690.3607070967996607No Hit
TGCGGA14690650.35602876112038984No Hit
TTAGCG14528760.3521053475112044No Hit
CCAGCG14256270.3455015364396933No Hit
ATTCGA13971190.33859260598255214No Hit
GACTAA13966810.33848645642663No Hit
GGCGTT13926950.33752044699762185No Hit
ACAGTG13869930.33613856396595987No Hit
CATACG13753070.3333064550378642No Hit
CGCTTG13586820.32927737657392525No Hit
CGTCAG13538230.3280997950848258No Hit
AATTGC13514930.3275351182234135No Hit
TAAGTC13419850.3252308488679169No Hit
ACCTGC13377530.32420522119517164No Hit
AATCGG13184850.31953561013693554No Hit
TGGCAT12939290.3135844491889364No Hit
TCTCGC12494560.3028063916534924No Hit
AGTTCC12482120.30250490752662684No Hit
ATTGCT12481490.3024896394398161No Hit
CGATGT12454210.3018285070458537No Hit
AGGTGT12419100.3009776141443867No Hit
TCGGAC12358360.2995055766953662No Hit
GCGGCT12318650.2985432025251225No Hit
CTGGAG11983550.2904220344453273No Hit
GTACGC11938440.2893287909595632No Hit
TGACAC11906720.28856005490617287No Hit
TCAAGC11902980.28846941578764573No Hit
TGACCA11799730.2859671460047784No Hit
AGGTCA11753800.2848540297711019No Hit
ACCGCT11749270.2847442449564153No Hit
GTCGAG11349330.2750516756880379No Hit
AACAAT11228540.27212432298031347No Hit
AGATGC11113680.26934068416907725No Hit
AAGAGG11084950.2686444109403917No Hit
TATTCT10876390.2635899471542918No Hit
TGCGAC10871560.26347289182207634No Hit
AGCCTA10798020.2616906456251556No Hit
GGATTC10774890.26113008872367643No Hit
GGACTA10714830.2596745311143882No Hit
GCCAAT10710180.25956183809269No Hit
TCTCTG10562830.2559908022330726No Hit
GGTGGT10494050.25432391491427725No Hit
TCCACG10330860.2503689957291332No Hit
TTCACA10211620.24747920736197482No Hit
GAGTGA10083510.24437445402654495No Hit
GATTCA10069810.24404243372605794No Hit
ATCCAC9973720.24171368696154727No Hit
CTATGC9958290.2413397400099769No Hit
CCGACT9537020.23113023694529383No Hit
TATGGT9473880.22960003535604204No Hit
GGAGGC9421220.22832381717913364No Hit
AGTCAA9389560.22755653522924907No Hit
AAGCAT9290510.22515605269178648No Hit
AGACGG8804590.21337975309962276No Hit
TACTCG8770380.21255067175074246No Hit
AGTGCA8725560.21146445643192296No Hit
TTCCAT8686740.2105236514636817No Hit
CTACCG8336280.2020302328864062No Hit
TTAGGC8209290.1989526228164176No Hit
ACGTAA8044990.19497080271641656No Hit
GTTACA7989800.193633269841681No Hit
AGTAGG7950720.192686163758248No Hit
AGGCTT7949700.1926614439986497No Hit
AGAGGT7934930.1923034921856429No Hit
TACGAA7911850.19174414703708526No Hit
GCCTGG7895250.1913418450671521No Hit
CTATTA7882210.1910258199052287No Hit
CTCGTC7385340.1789841464232597No Hit
CGTCTC7327370.17757924008608952No Hit
CACCTA7216550.17489351091090927No Hit
AGAACG7148100.17323462116139576No Hit
GAACCG7061890.17114531677417064No Hit
CATAAC6877340.16667273674096802No Hit
ACACGA6747600.16352848026029773No Hit
ATGTGA6484630.1571553869450374No Hit
GCATAA6222950.1508135568551514No Hit
CAAGCT5919360.14345603546647637No Hit
CGACAA5605270.13584404596428937No Hit
CGAGAG5441170.1318670728759743No Hit
TAATGA5211030.12628961652896128No Hit
GGATCG4483290.10865279510732559No Hit
TATTGG4428380.10732204804895032No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)