FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001836022

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836022
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences410275937
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCT54084831.3182549870089018No Hit
CAGCCT46889311.1428725345888369No Hit
GGTAAT45352591.1054167673499213No Hit
CCATGA43972241.0717723374549262No Hit
GCTGTC41874881.0206516206189298No Hit
GGTACC40722120.992554432944967No Hit
TAGCTT39213140.955774796024657No Hit
AACCTT38965430.9497371521449965No Hit
CCGGAA38730910.9440209992135122No Hit
TTACGT38167160.9302802469743674No Hit
TCGTGG37877680.9232245078024158No Hit
AACTAG37513880.914357304849687No Hit
ACCAGG36672380.8938467185805244No Hit
CGTACT36420170.8876993924213499No Hit
GACACG36230750.8830824996689971No Hit
GCACAT35673820.8695079770179162No Hit
CAGATC34871010.8499404146141771No Hit
CTTAGC33763420.8229441932881382No Hit
AAGGCG33455970.8154504562133266No Hit
ATCCGG33160370.8082455491412356No Hit
ACTTGA33038780.8052819339487609No Hit
GTCGAG32981040.8038745884333938No Hit
CACATT32454120.7910315247174733No Hit
TTAGTA32303950.7873713051808836No Hit
GAGATA32258120.7862542520986308No Hit
TCATGT31570460.7694933373584617No Hit
TGATAA31389480.765082159814798No Hit
TCCAGA31356810.7642858664655247No Hit
CTGTTC31331310.7636643335482773No Hit
GTGGTG30622020.746376212651243No Hit
TGCATA30377450.7404151026288437No Hit
GGCCGT29893860.7286281573954458No Hit
GAGTCG29418780.7170486335395293No Hit
GTTGGC28994740.7067131504717031No Hit
TACAGT28436170.6930986547231992No Hit
CGTGAA28228470.6880362081776197No Hit
AGTTAG28199550.6873313167279416No Hit
ACAGCC28028830.6831702147815703No Hit
TTCTAC27944660.6811186686778562No Hit
TACGGC27904860.6801485898501525No Hit
AACATA27786000.6772515152405831No Hit
CGAGCC27481500.669829680993453No Hit
GTACTT27419850.6683270337641078No Hit
GCGCAG27329730.666130463313036No Hit
TTGAAT27299140.6653848675507381No Hit
TAGAGC26438920.6444180029987965No Hit
AGGACT26210240.6388441932922817No Hit
GAGAAG25779070.6283349247460253No Hit
CAAGGA25498730.6215019624706872No Hit
ACTAGC25088570.6115047883005628No Hit
TGGCAT24936300.6077933837001998No Hit
GTCTCA24736950.602934458717719No Hit
CATGAG24728860.6027372743529923No Hit
ACGAAC24651550.6008529327909377No Hit
CATACG24394920.5945978742594402No Hit
GGACTA24311840.5925728956412084No Hit
AACTCT24287460.5919786614246402No Hit
TGTGAT24166580.5890323516584888No Hit
CTGAGG24129140.5881197950929303No Hit
GATCAG23978410.5844459262060012No Hit
GGCTAC23399050.5703246983261414No Hit
AAGCGC23034800.5614465271454612No Hit
CTGTAT22575780.5502584471582109No Hit
CTATGC22443310.5470296445877108No Hit
GACTTG22414730.5463330402435959No Hit
CCTTAT22262610.5426252917192168No Hit
CCGTCG21931410.5345526759469689No Hit
TCTTCA21573620.5258319597719912No Hit
ACTAAT21563070.5255748157611301No Hit
ACACGA21262690.5182534017343552No Hit
CAACGG21089410.5140299027578603No Hit
GGCCAG20775320.5063743233861653No Hit
TGTGTG20709460.5047690622908748No Hit
GAAGAT20606020.5022478322924409No Hit
GAATAC20136340.4907999271719413No Hit
ATGTGA19378460.4723274813945523No Hit
GTAAGA19290260.4701777087160732No Hit
ATTGAA19251100.46922322914590037No Hit
CCTCGG19122640.4660921656733673No Hit
ATCAGC19057490.4645042100044No Hit
CAGTCC18639250.4543100952079478No Hit
CGAATT18105510.4413008019039635No Hit
GCCATA17735000.43227005048555894No Hit
AAGAGG17289780.4214183294888191No Hit
GCCAAT17153870.41810568090909017No Hit
GTCTGC17125280.41740883282657637No Hit
TCCACG17076830.41622792028380645No Hit
GAGCAC16763910.40860085830478526No Hit
CCAGCG16670150.4063155670765064No Hit
GCTCAA16588260.40431959332774614No Hit
CTGGAG16240360.39583993442930093No Hit
GCATAA16206720.3950199984553322No Hit
CAGTAG16062440.39150334083570687No Hit
ATGGCC15980620.3895090732557391No Hit
CCACTT15976660.38941255284976656No Hit
GCTTCT15933150.3883520470760633No Hit
TATAAG15922620.38809539054200004No Hit
CTATTA15726860.38332396764473176No Hit
TCTCTG15595010.38011027685496457No Hit
AATCGG15356050.3742859040743596No Hit
CGTTGC15154420.369371406736925No Hit
TGCGAC14929270.3638836366852292No Hit
CAGGAC14853350.3620331747606246No Hit
ATTCAT14050050.3424536691753384No Hit
CGAAGC13612140.3317801209482095No Hit
CTACCG13064340.31842813145534293No Hit
TTCTGT12957260.3158181806797019No Hit
TTAGGC12672860.30888626061440205No Hit
CGCTTG12515150.3050422623250264No Hit
TAAGTC12486510.304344195550518No Hit
GCGTAT12183210.29695160991125835No Hit
CATAAC11986000.29214484494614656No Hit
AGTGCA11750640.286408217989153No Hit
TCAATG11686960.2848560918648271No Hit
GGATCG11655950.2841002590897745No Hit
CGAGAG11650240.2839610844639909No Hit
TACTCG10781410.2627843611505785No Hit
TTCACA10748920.2619924550924857No Hit
AAGCAT10604990.25848432831682255No Hit
CAAGCT10436650.25438123610939434No Hit
CGATGT10407020.25365903923339284No Hit
AGGCTT10355560.2524047614325478No Hit
ACGCTA10349160.2522487688572386No Hit
TATGGT10277080.2504919024778195No Hit
TCAAGC10151600.24743347304816465No Hit
AGGTGT10075410.24557643018678915No Hit
TGACCA10022060.24427608582854812No Hit
GGAGGC9863940.2404220942648167No Hit
GGATTC9577340.23343655175175432No Hit
TAATGA9430040.22984628513565494No Hit
GACCGA9255400.22558963773690682No Hit
AATGTA9119550.22227845158757142No Hit
ACCTGC8974390.218740344988841No Hit
CTCCGC8889880.2166805117795636No Hit
CCGCTC8781210.21403180659849425No Hit
CGTCAG8732910.21285455013170806No Hit
GACCAT8619550.21009153164154495No Hit
ATTGCT8559610.2086305636784153No Hit
ACAGTG8510770.2074401453380874No Hit
CTTCAC8392930.20456793204520793No Hit
ACCGCT8302490.20236356196537067No Hit
ATTCGA8299500.20229068418409338No Hit
AGTAGG8213080.20018429694062218No Hit
CACCTA8075970.1968423997530228No Hit
AGATGC7929200.1932650512720662No Hit
GTACGC7914800.19291406797762062No Hit
CTAGTT7589930.1849957386118894No Hit
GATCCT7582570.1848163471502839No Hit
GATTCA7511460.18308312339556No Hit
TCTCGC7453450.181669196943422No Hit
ATGCCG7407510.18054946273878109No Hit
GCCTGG7402680.18043173709210247No Hit
GAGCCA7387640.180065154540126No Hit
GAACCG7219310.17596230607109672No Hit
AGAACG7114240.17340134671363872No Hit
CTCGTC7109590.17328800835814068No Hit
TATTGG7018130.1710587769616135No Hit
TGCGGA6998150.1705717876405703No Hit
TCCTCC6782230.16530898813107822No Hit
CATTAA6693840.16315458442301967No Hit
GGTGGT6656990.16225640842299752No Hit
TTCGTT6622210.16140868627155192No Hit
AGGTCA6500030.1584306905135409No Hit
CCTGAC6456600.15737213464702904No Hit
GGCAGG6451510.1572480718019785No Hit
GTTACA6351890.15481994987193215No Hit
ACGTAA6304400.15366243621545858No Hit
AATTGC6257510.1525195468629202No Hit
ATACCT6173490.15047165683518993No Hit
GCGGCT6162370.1502006197355903No Hit
TATTCT6137750.14960053579744795No Hit
TACGAA5872560.14313683719647444No Hit
AGTTCC5842810.14241171545968584No Hit
TCGGAC5635370.1373556061124784No Hit
AAGTTG5616310.13689104072413585No Hit
TTCCAT5506940.13422527385514202No Hit
CGTCTC5461070.13310724581929356No Hit
GGCGTT5366140.13079343719834097No Hit
TTAGCG5295750.1290777626083394No Hit
GACTAA5283890.12878868886721961No Hit
TGACAC5043780.12293628617073879No Hit
AGAGGT5004640.12198229407736384No Hit
AGTCAA4819190.11746216546938264No Hit
CGACAA4788360.11671071998551064No Hit
CCGACT4752590.11583886773257189No Hit
ATCCAC4688540.11427772328748591No Hit
GAGTGA4546440.11081420063882517No Hit
AACAAT4463440.10879117192778479No Hit
AGACGG4133620.10075219205458788No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)