FastQCFastQC Report
Thu 14 Sep 2023
EGAF00001836030

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836030
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413518070
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGAT63988131.5474083151916431No Hit
GCACAT51781821.2522262932790338No Hit
ACACGA51228431.2388438067531125No Hit
CTTAGC50956401.2322653759725664No Hit
TCCACG45204291.0931635950032366No Hit
CGAGCC42475251.0271679300495864No Hit
GGCCGT41749701.0096221429936543No Hit
CAGGAC41377861.000630032926977No Hit
GGTACC38667650.935089728968797No Hit
ACTTGA36765790.889097542944133No Hit
CAGCCT35901480.8681961588764429No Hit
CTATTA33985450.8218613034250233No Hit
GCTGTC32694680.790646948028172No Hit
GAACCG32111430.7765423648838369No Hit
TCGTGG31520100.7622423851997567No Hit
TATTGG31067240.7512909895328154No Hit
TACGAA31004610.7497764245223915No Hit
GAGAAG30965960.7488417616187849No Hit
AACCTT30665120.7415666260968958No Hit
AGTTAG30260630.7317849495670165No Hit
AAGCGC29564640.714954004307478No Hit
ACTAAT29052850.7025775197683622No Hit
GGCTAC28936340.6997599887231046No Hit
CCTGCT28617080.6920394071291733No Hit
CTGTTC27647850.6686007699736072No Hit
GCGCAG26750430.6468986953822841No Hit
GGTAAT26563390.6423755556800698No Hit
CGATGT26556530.6422096620832072No Hit
TGATAA26498550.6408075468140969No Hit
CTGAGG26364750.6375718961930733No Hit
TCAATG25236540.6102886870215852No Hit
TAGCTT25132690.6077773094655815No Hit
CTGGAG24990320.6043344127621799No Hit
GCCATA24386170.5897244103504352No Hit
CGCTTG24342120.5886591606504644No Hit
GAGATA24292950.5874700953213484No Hit
ATTGCT24127020.5834574532619579No Hit
CGTGAA23588660.5704384333192501No Hit
GCTCAA23530660.5690358343953386No Hit
CTACCG23270990.562756302282026No Hit
GGACTA23237880.561955611758393No Hit
GCCAAT23230330.5617730320708838No Hit
GCTTCT23061550.5576914692023012No Hit
TTAGTA22997430.5561408719091768No Hit
GGATCG22991730.5560030302907925No Hit
GATCCT22812600.5516711760625116No Hit
CGAGAG22474530.5434957171279118No Hit
TGTGAT22425140.5423013315959808No Hit
CCGTCG22251570.5381039334024751No Hit
CCATGA22153020.5357207243688287No Hit
GACTTG22071200.5337420925765106No Hit
GTGGTG22041340.5330199959580968No Hit
CGTTGC21971480.5313305897369853No Hit
AGATGC21876160.5290254909537568No Hit
TATAAG21754560.526084869761556No Hit
GAGTCG21695490.5246563953057722No Hit
TACGGC21463780.5190530126047455No Hit
GAGCAC21413150.5178286404751309No Hit
CACATT21144130.5113229997421878No Hit
CATACG20709350.5008088280156656No Hit
TTCCAT20626040.49879416394064713No Hit
TTCTGT20598150.49811970732016625No Hit
TCTTCA19971720.4829709134597189No Hit
TTGAAT19654480.4752991810007239No Hit
TCCAGA19487650.4712647744752726No Hit
CTCGTC19467070.4707670936846847No Hit
CCACTT19187750.46401237072904694No Hit
CAGTCC19093180.4617254090008691No Hit
AAGAGG18875670.45646542120879985No Hit
ACAGCC18866860.45625237126880575No Hit
CCTTAT18830920.4553832435907819No Hit
TTCACA18780780.4541707210038004No Hit
CCTCGG18757010.4535958972723973No Hit
CATAAC18699150.45219668393209517No Hit
CGTACT18630130.45052759121264035No Hit
AGGACT18597580.4497404430234451No Hit
AGAACG18569380.4490584897535433No Hit
CCGGAA18550920.44861207637189837No Hit
ATTGAA18491250.44716909227207413No Hit
TTACGT18453290.446251115459114No Hit
CAGATC18352150.443805273128693No Hit
AAGGCG18225060.4407318886935219No Hit
TGTGTG18147820.4388640138507128No Hit
TCATGT18111420.43798376211225787No Hit
GTCGAG18048390.43645952400580706No Hit
CATGAG18006190.435439012374961No Hit
TTCTAC17716130.42842456679099905No Hit
AGTGCA17700590.42804876701035094No Hit
GACTAA17693450.4278761022462695No Hit
GAGCCA17670470.4273203828795196No Hit
AGGCTT17651550.4268628454374436No Hit
TGGCAT17624150.4262002383595957No Hit
AGTTCC17507890.423388752999355No Hit
TCTCGC17480120.4227171983076821No Hit
GATCAG17478780.4226847934359918No Hit
CACCTA17382300.42035164267428504No Hit
TGACCA17382100.42034680612627157No Hit
CTGTAT17199090.4159211228665291No Hit
CGTCTC17058810.4125287680898685No Hit
TACTCG17020850.4116107912769084No Hit
ACGAAC16616660.4018363695690493No Hit
CGTCAG16572150.4007599958086475No Hit
ACCTGC16558040.4004187773462959No Hit
CGAATT16514200.3993586060217393No Hit
CATTAA16269050.393430207294206No Hit
CAAGGA16121000.38984995262722133No Hit
GTAAGA16045440.3880227047877255No Hit
GTTGGC15960730.38597418487661256No Hit
ATGTGA15768660.38132940599185905No Hit
ATGCCG15650800.37847922824751046No Hit
AATGTA15295340.36988323146313773No Hit
CGAAGC15240530.3685577754800413No Hit
ACTAGC15193720.3674257814174844No Hit
GACACG14953200.3616093487764634No Hit
TATTCT14896730.360243749444855No Hit
TGCATA14795320.3577913777746158No Hit
CGACAA14780110.35742355829818995No Hit
AACATA14762640.35700108582921175No Hit
GGCCAG14674200.3548623642976473No Hit
GTCTCA14652500.3543375988381838No Hit
CAAGCT14390270.34799615891029867No Hit
ATCCGG14331420.3465730046573297No Hit
AGGTGT14134680.3418152923764613No Hit
GTACGC14123730.34155049137272286No Hit
AGAGGT14104720.34109077748404076No Hit
TTAGCG13862670.3352373452507166No Hit
ATCAGC13809120.33394235952010515No Hit
GAATAC13806280.3338736805383136No Hit
TAGAGC13595320.32877208969368615No Hit
TTAGGC13580730.32841926351610223No Hit
GGAGGC13560990.3279418962271709No Hit
GCGTAT13318940.3220884639938468No Hit
ACAGTG13275550.3210391749023205No Hit
ACCGCT13046230.31549358895005486No Hit
AACTAG12976130.31379837887132717No Hit
TTCGTT12822960.3100943085751972No Hit
CCGCTC12811500.30981717437402434No Hit
TATGGT12595850.3046021664784806No Hit
CTTCAC12463660.3014054500689656No Hit
AATTGC12373470.299224408742283No Hit
CCAGCG12207780.2952175705405087No Hit
ACCAGG12183880.2946396030528968No Hit
AGTCAA12028340.290878219662807No Hit
GATTCA12013120.2905101583589806No Hit
TCTCTG11970450.28947828084030286No Hit
TGCGGA11913920.28811123054429033No Hit
ATCCAC11909020.28799273511795986No Hit
AACTCT11756220.2842976124356549No Hit
ATTCAT11668040.2821651784165079No Hit
TGCGAC11666010.282116087454171No Hit
CTAGTT11526380.27873945145855417No Hit
CTCCGC11491260.2778901536273856No Hit
GGCGTT11404910.27580197402256207No Hit
GACCGA11206100.27099420346975406No Hit
CCTGAC11009520.26624036042729643No Hit
ATTCGA10882800.26317592360595027No Hit
GCGGCT10848610.2623491157230445No Hit
CAGTAG10791770.2609745687776111No Hit
TACAGT10779270.26067228452676805No Hit
ATGGCC10714630.25910911220880867No Hit
GCCTGG10677960.2582223311305356No Hit
ACGCTA10615410.25670970073931715No Hit
AAGTTG10606880.25650342196654186No Hit
GTACTT10553130.2552035996879169No Hit
TAAGTC10412680.2518071338454448No Hit
AGACGG10367270.2507089956189823No Hit
AGGTCA10224570.24725811861135838No Hit
TCAAGC10185940.24632393936255315No Hit
CTATGC10001980.24187528249974663No Hit
TCGGAC9942230.240430363780717No Hit
GGATTC9915380.2397810572099062No Hit
TCCTCC9848670.23816782662000718No Hit
AATCGG9775140.23638966974284825No Hit
GTCTGC9774490.2363739509618044No Hit
TAATGA9702770.2346395648441675No Hit
AGTAGG9445500.22841807130701686No Hit
ACGTAA9418640.22776852290880542No Hit
GACCAT8911800.21551174293302347No Hit
AAGCAT8717850.2108215004969432No Hit
GGTGGT8539180.20650077032909347No Hit
GTTACA8389050.20287021556276852No Hit
ATACCT8251180.1995361411896704No Hit
CAACGG8053020.19474408941790622No Hit
AGCCTA8019540.19393445128044828No Hit
GCATAA7724200.18679232082893016No Hit
GAGTGA7514210.18171418724216815No Hit
AACAAT7346380.17765559797664948No Hit
GGCAGG6757110.16340543473710836No Hit
CCGACT6135020.14836159396855378No Hit
TGACAC5497100.1329349404247316No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)