FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001836036

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836036
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences339115471
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACTAAT41908401.2358150418917337No Hit
CTCGTC37901181.1176482125169689No Hit
CCTGCT31205450.9202013080671274No Hit
TGATAA28960280.8539946559972783No Hit
GGCTAC28343810.8358158923395153No Hit
CCTTAT27767070.8188087060174262No Hit
CGTACT26599400.7843758918330211No Hit
GCCAAT26593800.7842107563414586No Hit
GTCTGC26086190.7692421086857462No Hit
CTTAGC25729200.7587150159834495No Hit
TAGCTT25159430.7419133643713943No Hit
GGCCGT24472270.7216500600174623No Hit
TCGTGG23993220.707523603368718No Hit
GAAGAT23431410.6909566800625265No Hit
GTACGC22678390.6687512643738982No Hit
GCTTCT22664300.668335771681735No Hit
GGTACC21869640.6449024556594175No Hit
GAGCAC21769430.6419474150148697No Hit
CGAGCC20765100.6123312492575722No Hit
GAGAAG20652790.609019397997327No Hit
GACTTG20503150.6046067417549346No Hit
GTACTT20190240.595379501279079No Hit
TCTTCA20142490.5939714263287033No Hit
GAATAC20038220.5908966624527726No Hit
TACAGT20028160.590600008337573No Hit
CCATGA19575950.5772650225091028No Hit
GACCAT19308100.5693665329707119No Hit
GCTGTC19221620.5668163691652983No Hit
GCGCAG19115680.5636923595267053No Hit
TTCTGT18625630.5492415295909634No Hit
ACAGCC18601260.5485228953178606No Hit
ATCCAC18506680.5457338748192943No Hit
ATTGAA18417700.5431099898122902No Hit
AAGCGC18110660.5340558467177688No Hit
AACCTT18079470.5331361010067276No Hit
CGTTGC18015760.531257389905399No Hit
TCAAGC17872280.5270263827037251No Hit
TACGGC17718830.522501375350109No Hit
GACCGA17689640.52164060660034No Hit
GATCAG17688100.5215951943401603No Hit
GTCGAG17466850.5150708679994137No Hit
CAGCCT17441930.514336015061961No Hit
CTGTAT17400890.5131258078166537No Hit
TTGAAT17369340.5121954462525834No Hit
CCTCGG17347890.5115629183429381No Hit
TCTCTG17041390.5025246990279603No Hit
ATGGCC16835280.49644682828404485No Hit
TAGAGC16798940.49537521689772746No Hit
TGTGAT16731840.4933965398470423No Hit
GTTACA16707840.49268881631177486No Hit
CGTGAA16702270.4925245654746315No Hit
CAGTCC16684700.4920064528698545No Hit
GCATAA16502470.4866327670435301No Hit
GGTAAT16163500.47663705676229673No Hit
ATGTGA16067770.4738141245109988No Hit
GTCTCA16052160.4733538093282686No Hit
CACATT15968890.47089830354569695No Hit
ATTCAT15831990.466861330546609No Hit
AGGCTT15741920.4642053030957116No Hit
ACACGA15642070.4612608783041927No Hit
CTTCAC15443710.45541154328520744No Hit
TTAGTA15420190.45471797422064536No Hit
AGCCTA15407680.45434907332788715No Hit
CTATGC15361190.4529781538631129No Hit
GAGCCA15347980.45258861103390946No Hit
TTACGT15328260.45200709819576473No Hit
GAGTCG15327430.4519826227568367No Hit
AACATA15303750.45128433553537284No Hit
TCTCGC15236830.44931096641120216No Hit
ACGCTA15236000.4492864909722742No Hit
TGCATA15225120.44896565630295293No Hit
GACACG15125120.4460168082393386No Hit
CATACG15065750.4442660771439708No Hit
AAGCAT14960140.4411517987039878No Hit
CCGGAA14830450.43732743765028637No Hit
ACTAGC14786330.43602640588461977No Hit
GGACTA14562500.42942599926383185No Hit
CTGTTC14380630.42406292929053657No Hit
CTCCGC14310210.42198635048413935No Hit
CTAGTT14190450.41845481004315493No Hit
ATCCGG14083380.41529747842144304No Hit
AACTAG14073910.4150182225098188No Hit
GCTCAA14052200.41437802759520814No Hit
TTAGGC14033440.41382482369847406No Hit
CATAAC13874370.4091340910836828No Hit
CAGGAC13550280.39957716939431526No Hit
ACCGCT13534110.3991003406624288No Hit
CATGAG13045270.38468519178825666No Hit
CGAAGC12977170.38267702625693534No Hit
TCCAGA12919600.3809793744267126No Hit
CCAGCG12865910.37939613790135807No Hit
AGATGC12856600.3791216001466356No Hit
AGTGCA12833860.37845103209696973No Hit
GTGGTG12578990.37093530303723593No Hit
TCAATG12425120.36639791052175263No Hit
CAACGG12335820.36376458920094507No Hit
TCATGT12218720.36031148811845276No Hit
TCCTCC12205500.3599216504044429No Hit
TATTGG12129800.35768937242028687No Hit
GAGTGA12087330.3564369966476699No Hit
CATTAA12040830.35506578229808927No Hit
TGACCA12038920.3550094593000742No Hit
TTCGTT12030580.35476352537156874No Hit
TAAGTC11980630.3532905757637934No Hit
AAGTTG11932460.35187011565155046No Hit
GTTGGC11809940.3482571870040102No Hit
GAGATA11778460.34732888963358444No Hit
CAAGGA11684450.3445566775689806No Hit
AGTTAG11618120.34260070664838527No Hit
ACAGTG11574000.3412996748827186No Hit
CTACCG11541420.3403389401835931No Hit
TTCACA11531380.34004287583800624No Hit
CAGATC11518880.33967426983005444No Hit
CTGAGG11476840.338434574104111No Hit
GGCCAG11359070.33496171573959244No Hit
GCACAT11350100.33469720406828624No Hit
GCCATA11159570.3290787638526819No Hit
CGATGT11123140.3280044985031072No Hit
TTCCAT11024950.32510902458944435No Hit
GGTGGT10992070.324139443346128No Hit
AGTAGG10972240.32355468677511323No Hit
TCGGAC10898050.3213669363967178No Hit
CCGTCG10785470.3180471232467008No Hit
CACCTA10731840.3164656560301845No Hit
GATCCT10715300.3159779165604627No Hit
ATGCCG10633630.3135695923469089No Hit
TGCGAC10592910.3123688214154052No Hit
CTATTA10590780.3123060109516501No Hit
CGTCAG10573020.31178229553555226No Hit
AGGACT10456550.3083477721958607No Hit
CCGACT10446570.30805347715911197No Hit
ACTTGA10182710.30027264665845926No Hit
GGAGGC10159800.29959706556708526No Hit
AACAAT10118950.2983924611330988No Hit
ATACCT10086380.29743202131877966No Hit
CTGGAG9841200.2902020356364101No Hit
TACGAA9503430.2802417115319401No Hit
TATAAG9497810.280075986270765No Hit
GTAAGA9468830.2792214101019296No Hit
ATCAGC9356020.2758948146013663No Hit
AATCGG9353610.27582374736303317No Hit
AAGAGG9163340.2702129741523942No Hit
TGGCAT8926240.2632212553935647No Hit
GATTCA8849790.26096686104893163No Hit
TACTCG8789760.25919666755634396No Hit
GCGGCT8626880.254393583830329No Hit
GCGTAT8453600.24928381990569812No Hit
AGTCAA8110530.23916720685385656No Hit
ATTGCT8041690.23713721984686448No Hit
ACCAGG7865570.23194370863722696No Hit
CAAGCT7768890.22909276232932468No Hit
TCCACG7551720.22268874898957353No Hit
TAATGA7301870.2153210521026332No Hit
ACGAAC7276030.21455906976299527No Hit
GGATCG7266460.2142768650033074No Hit
CGAATT7113840.20977633308861926No Hit
GAACCG6806030.20069948386400807No Hit
CCACTT6722380.19823277245879473No Hit
AGGTCA6632130.19557143708138283No Hit
AATTGC6397850.18866287583794725No Hit
AGGTGT6375840.18801383437914576No Hit
AGAGGT6269520.184878619117911No Hit
GCCTGG6266800.1847984104505807No Hit
AGACGG6178430.18219251341676476No Hit
CGAGAG6114060.18029433991821622No Hit
AACTCT5995940.17681116058547502No Hit
GGCAGG5914140.17439900286943855No Hit
CCGCTC5532260.16313794188410827No Hit
CGTCTC5441140.1604509515285429No Hit
GACTAA5402780.15931977341134046No Hit
CGACAA5316060.15676253237057414No Hit
TGACAC4906410.1446825762779782No Hit
CGCTTG4624320.1363641707753286No Hit
GGATTC4522970.13337551326285554No Hit
TTCTAC4205260.12400672807994656No Hit
TATTCT4000300.1179627690887627No Hit
TGGCTT3897270.11492457092882088No Hit
CCTGAC3876430.11431003099236367No Hit
ATTCGA3859780.1138190477897719No Hit
GGCTGC3790970.11178994543719889No Hit
AAGGCG3721000.10972663644708797No Hit
TGCGGA3713240.1094978058373515No Hit
CCTTGT3643170.10743154799917695No Hit
TGCGGC3605860.10633133278664245No Hit
CGTGCT3421860.10090545234959217No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)