FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001836074

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836074
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences365007871
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGC33208410.9097998327822361No Hit
TAGCTT32972570.9033386022516758No Hit
CTTAGC29774460.8157210396156087No Hit
CAGTAG28536440.7818034148638948No Hit
GGTACC28435900.7790489537142063No Hit
ACTTGA27438870.7517336523408834No Hit
GAGAAG27398650.75063175829433No Hit
GGCTAC26889470.7366819221276464No Hit
AACTAG26772680.7334822650988806No Hit
ACCAGG26386900.7229131779462367No Hit
CGTACT25740520.705204518726666No Hit
GGCCGT25671820.7033223675332744No Hit
CAGATC25212080.6907270227057651No Hit
TACGGC24989490.6846287980458372No Hit
AACTCT24893100.6819880330744977No Hit
CCTTAT24861090.6811110656843891No Hit
TGTGAT24793840.6792686396617459No Hit
CAGGAC24613060.6743158697528471No Hit
CACATT24466910.670311846508099No Hit
GATCAG24318140.6662360439893089No Hit
GAATAC23589820.6462825016724091No Hit
GTTGGC23399440.6410667237364862No Hit
GCCAAT23295890.6382297986116579No Hit
GTGGTG23195190.6354709539948523No Hit
GTCTCA23162970.6345882333041525No Hit
GTAAGA22976980.6294927267472542No Hit
CATGAG22723910.6225594516015245No Hit
ACAGCC22698910.6218745348644824No Hit
ACTAAT22602580.6192354136933118No Hit
CGTTGC22594850.6190236374382184No Hit
GGCCAG22420710.6142527814146781No Hit
CGAATT22320280.6115013338986326No Hit
GGACTA22260240.6098564378629523No Hit
GTCTGC21733790.59543346121432No Hit
ATTGAA21666480.5935893913915078No Hit
TGACCA21526510.5897546795641566No Hit
CCTCGG21525570.5897289266948438No Hit
GACACG21187320.5804620032426643No Hit
TGCATA21140270.5791729899435512No Hit
TTAGTA21062190.5770338579904212No Hit
TCTTCA20661000.5660425881610646No Hit
AACCTT20637330.5653941089944331No Hit
CTGTTC20313120.5565118347817765No Hit
GCTCAA20255260.5549266634855663No Hit
TACAGT19951990.5466180755318562No Hit
CGAGCC19908180.5454178274418636No Hit
CGATGT19903620.5452928986290271No Hit
AACATA19622820.5375999138385703No Hit
CTGAGG19581500.5364678834555872No Hit
ATGCCG19521740.5348306584873618No Hit
CCTGCT19452160.5329243982248262No Hit
TTCTAC19305860.5289162654796559No Hit
GCTGTC19216470.5264672771946882No Hit
CCGGAA18915120.5182112908463828No Hit
ACTAGC18865010.5168384437386557No Hit
TCGTGG18819640.5155954568442718No Hit
CAGCCT18802850.5151354667636743No Hit
CCATGA18772540.5143050737116844No Hit
TTGAAT18690170.5120484100464782No Hit
AGTGCA18632640.5104722796511969No Hit
GAGCAC18572550.5088260137820425No Hit
CCAGCG18396420.5040006383862335No Hit
GCTTCT18335100.5023206746136167No Hit
GAACCG18259440.5002478426006326No Hit
GAGTCG18239650.49970566251159004No Hit
CTGTAT18226270.49933909507392515No Hit
GCACAT18215740.49905060814428304No Hit
CCACTT18174830.4979298103957874No Hit
ATGGCC18107370.49608163107255293No Hit
GTACTT18052630.4945819373851256No Hit
CTGGAG18028980.4939340061518838No Hit
ATTCAT17934970.4913584452539107No Hit
AGGACT17837810.48869658484707035No Hit
CTAGTT17760650.48658265782986365No Hit
GGCGTT17745910.4861788309217036No Hit
TCAATG17720640.48548651708390145No Hit
ACACGA17604680.48230959929080547No Hit
GCGCAG17551640.48085647994149694No Hit
TGATAA17534940.4803989555611528No Hit
TAGAGC17110570.46877263093321075No Hit
ACGAAC17037260.4667641810935085No Hit
TTACGT16895820.4628891961620192No Hit
GACCGA16842490.461428131778561No Hit
TCCAGA16675570.4568550797086784No Hit
TCTCTG16613320.45514963703344363No Hit
GAGATA16556690.45359816364069583No Hit
ACAGTG16535690.45302283358158046No Hit
TGTGTG16310440.44685173378083126No Hit
CGAAGC16157120.4426512764158995No Hit
TTAGGC15998640.4383094522364423No Hit
TCATGT15970320.43753357855672104No Hit
TCCACG15744800.4313550816552118No Hit
GACTTG15559950.4262908073015225No Hit
AGTTAG15537070.4256639715037816No Hit
AAGGCG15467700.4237634645418372No Hit
CAGTCC15155660.41521460779677266No Hit
TACGAA15147680.41499598237430885No Hit
CTATTA15096830.41360286173116523No Hit
TATTGG14832630.40636466165410445No Hit
CAAGGA14819640.4060087789175374No Hit
TCGGAC14814410.4058654943361482No Hit
GGTAAT14621280.4005743755591506No Hit
CGTGAA14284500.39134772521110917No Hit
TTCCAT14228120.3898031009857319No Hit
CCGCTC14168850.3881793003855525No Hit
CCGTCG13968150.3826807888205786No Hit
TGGCAT13950370.3821936760371943No Hit
GTCGAG13947030.3821021711611255No Hit
CAACGG13868120.3799402999723258No Hit
TTCACA13607780.3728078510394643No Hit
AAGCAT13588320.37227471185135075No Hit
AATCGG13427920.36788028606648865No Hit
GCCATA13289960.3641006415447956No Hit
ATCCGG13199960.3616349412914441No Hit
AGGCTT13190650.36137987829856966No Hit
CGAGAG13051600.35757037140714154No Hit
ATACCT12954780.3549178258679249No Hit
GACCAT12950420.35479837638898476No Hit
AGCCTA12896900.3533321066383251No Hit
GATCCT12861840.3523715794062972No Hit
AGGTGT12650270.3465752660440575No Hit
AAGAGG12627750.34595829304732995No Hit
GGTGGT12611330.3455084397344407No Hit
CATACG12409320.3399740385324458No Hit
GCGTAT12371650.3389420059930708No Hit
GACTAA12343200.3381625707463169No Hit
AATTGC12015350.3291805726567469No Hit
AGTCAA11988560.3284466158813326No Hit
CTACCG11970630.327955393597526No Hit
TCAAGC11849270.3246305337892289No Hit
GTTACA11818630.3237910998363101No Hit
ATGTGA11769820.32245386839890916No Hit
AGGTCA11746720.32182100533388225No Hit
TGCGGA11638370.3188525761955418No Hit
CACCTA11547550.3163644106732153No Hit
GCATAA11492990.31486964838629466No Hit
CCTGAC11401710.3123688803960066No Hit
GAGCCA11358280.3111790430404171No Hit
CTCCGC11286480.3092119621716322No Hit
TTAGCG11261430.308525675601116No Hit
CATAAC11167890.30596299113779934No Hit
TGCGAC11064390.3031274358464451No Hit
TACTCG10909330.2988793082766152No Hit
CCGACT10849140.29723030274051265No Hit
AACAAT10698080.2930917618486096No Hit
CGACAA10601790.29045373654421824No Hit
ATTGCT10530600.2885033676438172No Hit
AAGTTG10491160.2874228429994596No Hit
CATTAA10221230.2800276600062687No Hit
GGATCG10084460.2762806175212589No Hit
TATGGT10040910.27508749256533155No Hit
CTATGC9987320.2736193050478081No Hit
AGTAGG9934370.27216865139875296No Hit
GGAGGC9862250.27019280359573394No Hit
CAAGCT9859180.27010869582042524No Hit
GTACGC9644130.26421704204838914No Hit
TATTCT9636700.2640134847941402No Hit
TATAAG9526180.2609856048830246No Hit
TTCGTT9508380.2604979441662506No Hit
TAAGTC9491810.2600439813529391No Hit
ACCGCT9275180.254109040843122No Hit
CGTCAG9259270.2536731598316684No Hit
AATGTA9156330.2508529466752239No Hit
ACCTGC9035240.24753548396768682No Hit
GCGGCT8876430.24318461888730067No Hit
ATCCAC8645160.2368485911362717No Hit
ACGCTA8625640.23631380814798922No Hit
TTCTGT8545060.23410618452115514No Hit
AGTTCC8448100.23144980344821112No Hit
ACGTAA8415690.23056187739030976No Hit
AAAAAA8130880.22275903195523145No Hit
AGAACG8130400.22274588155388025No Hit
TGACAC8114060.22229821997454954No Hit
AGATGC7768430.21282910910159522No Hit
CTTCAC7641720.2093576771115711No Hit
TCCTCC7592200.20800099403883812No Hit
ATTCGA7480490.20494051209103925No Hit
CGCTTG7477500.20485859604928905No Hit
AGAGGT7387380.2023896081955997No Hit
GGATTC7253490.19872146811869706No Hit
TAATGA7220560.19781929579266527No Hit
TCTCGC7209480.1975157406948082No Hit
ATCAGC7036220.1927689937404117No Hit
CTCGTC7017020.19224297768636336No Hit
GATTCA6738400.1846097176353767No Hit
GGCAGG6648140.18213689424795992No Hit
GCCTGG6596350.18071802073550353No Hit
GAGTGA6395930.17522718023798453No Hit
CGTCTC6316130.17304092601334617No Hit
GAAGAT4342540.11897113309099025No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)