FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001836078

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836078
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences368674464
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTA47838411.2975786139611776No Hit
TGGCAT42201681.1446868205116587No Hit
GCATAA38047481.0320074677046254No Hit
AGACGG36589090.9924498052569217No Hit
TCTCTG35869110.9729209235386588No Hit
CGTACT35587500.9652824774975465No Hit
CATAAC34305710.930514948819455No Hit
TCTTCA33790570.9165421882867375No Hit
TACAGT33681490.9135834805200937No Hit
TGTGTG33648720.9126946204768878No Hit
CAAGGA32509210.8817863230147667No Hit
CCAGCG32328600.8768874212020282No Hit
AGCCTA28826520.7818963018821938No Hit
CTTAGC27485470.7455213930954546No Hit
GGTGGT27296250.7403889519182972No Hit
CAAGCT26940450.7307381614583428No Hit
GGCTAC26408760.7163164954109759No Hit
GGCGTT26270480.7125657609961291No Hit
GATCAG26002380.7052937629008121No Hit
ACTAAT25956400.704046592171895No Hit
ACCTGC25705580.6972433002574325No Hit
CGATGT25487350.6913239860301255No Hit
AACTCT25358260.6878225230158604No Hit
GGTAAT25156010.6823366535090426No Hit
GTACGC24891420.6751598613567117No Hit
CTCGTC24816530.6731285299976729No Hit
GCGCAG24336270.6601018615707541No Hit
CACCTA23716360.6432872985746038No Hit
CGTCTC23388560.6343959857225153No Hit
TAATGA23372520.6339609135500093No Hit
AATCGG23303500.6320888012466196No Hit
GGAGGC23098550.6265296963990432No Hit
GACCGA22855450.6199358033107495No Hit
TAGAGC22754460.6171965303243785No Hit
CTCCGC22674200.6150195420098312No Hit
CGAAGC22587290.6126621777634157No Hit
GCTCAA22295540.6047486923314548No Hit
TATGGT22173130.6014284189750663No Hit
AAGCGC22081860.5989527932154259No Hit
CTATGC22027540.597479406656166No Hit
AGTTAG22002300.5967947918410752No Hit
AAGCAT21981230.5962232849411562No Hit
TTCGTT21962780.5957228434459729No Hit
CGTCAG21708730.5888319403646031No Hit
GTAAGA21284350.5773209722493826No Hit
TAAGTC21161760.5739958165369435No Hit
GAACCG20987580.5692713233320115No Hit
CAGTCC20968350.5687497249606092No Hit
TGATAA20744780.5626855675038019No Hit
ACGCTA20653990.5602229613602965No Hit
AACAAT20547170.5573255542862876No Hit
GTTACA20357770.5521882307530798No Hit
TTAGGC20115920.5456282429151372No Hit
TGACCA20001660.5425290317910383No Hit
CCGACT19837480.5380757805889154No Hit
GATCCT19810250.5373371886152657No Hit
CCGTCG19739320.5354132690893395No Hit
ACTTGA19705530.534496742361847No Hit
CATTAA19489060.5286251667270343No Hit
GTCTCA19340990.5246088863914372No Hit
AGATGC19152820.5195049256245748No Hit
TAGCTT19146960.5193459778109286No Hit
CTGGAG18905020.5127835487949608No Hit
GCCAAT18531570.5026540162000479No Hit
GGCCGT18230470.49448691949546036No Hit
TATTCT18205080.49379823605032763No Hit
AGGCTT18202310.49372310201554936No Hit
CTGAGG18200670.49367861832708865No Hit
TCAAGC18014760.48863595825286127No Hit
GGATCG17702990.4801794463312761No Hit
GAGTGA17510500.4749583090192002No Hit
CTGTAT17444750.4731748928507291No Hit
ACCGCT17275010.4685708310950444No Hit
ACAGTG17235830.4675081049280375No Hit
GCCATA17122150.46442462584010163No Hit
TACTCG16842310.4568341896334865No Hit
TTCCAT16564660.44930315542548666No Hit
AGTAGG16523720.44819269066598544No Hit
CCGGAA16337900.44315247176978334No Hit
ACGTAA16289520.441840202960192No Hit
GAGCCA16014880.43439081259503776No Hit
TACGAA15960590.4329182397617861No Hit
CCTGCT15762430.42754330823411735No Hit
ACCAGG15659710.4247571103812604No Hit
CAGATC15659080.4247400221350834No Hit
AGGACT15657770.4247044894327153No Hit
GTACTT15614970.4235435736606916No Hit
GGACTA15376480.417074723135693No Hit
AATGTA14957850.4057197191720878No Hit
AAGTTG14547980.39460232320294364No Hit
GGATTC14281650.38737833494212387No Hit
TATTGG14087950.38212437734770804No Hit
GTCTGC13999890.37973582027096947No Hit
CATGAG13970470.37893782629870454No Hit
TCGGAC13637780.3699138761072424No Hit
AGGTGT13634210.3698170427122395No Hit
CGAGAG13579770.36834040124894574No Hit
CTAGTT13392050.3632486463722098No Hit
GCTGTC13210360.3583204504231679No Hit
GACCAT13177750.3574359302520068No Hit
GTCGAG13086900.3549716966564845No Hit
TCCAGA13085600.3549364351961193No Hit
TTCTGT12941550.3510291941456515No Hit
GGTACC12866770.34900084644864365No Hit
AACCTT12810110.34746398926072625No Hit
TGTGAT12801930.34724211330242827No Hit
TCTCGC12791020.3469461882773633No Hit
TTACGT12768420.3463331813510143No Hit
TTGAAT12625460.34245550567885275No Hit
GTGGTG12603540.3418609432086948No Hit
CGACAA12488540.338741660176388No Hit
CAGGAC12439300.3374060645545551No Hit
ACTAGC12431130.33718445983825995No Hit
ATTCAT12339440.33469744191450157No Hit
CAGCCT12338620.3346752000702712No Hit
GACTTG12254320.3323886299865889No Hit
ATTGAA12217290.33138422085018615No Hit
GAATAC12214280.33130257700734056No Hit
CCTCGG11908890.3230191174835478No Hit
TCATGT11350310.3078680816906266No Hit
AGTCAA11268590.3056514920436692No Hit
TATAAG11222700.30440676249277737No Hit
AGAGGT11161110.30273618299747496No Hit
ATCCAC11139140.302140264317303No Hit
CGAATT11073710.3003655278929218No Hit
AACATA11016140.29880398768274874No Hit
ACACGA10931790.29651606138905245No Hit
ATACCT10900070.2956556817561414No Hit
ATCAGC10841570.29406891603970703No Hit
TCAATG10838850.29399513821494294No Hit
TTAGCG10522000.2854008353559307No Hit
GAGAAG10503230.28489171411665765No Hit
CCACTT10396060.28198481357255056No Hit
TTCTAC10330540.2802076359701441No Hit
CACATT10315290.27979399191585996No Hit
TGCGAC10092100.2737401416551595No Hit
TGCATA9764920.2648656458072453No Hit
CGAGCC9696480.2630092655400185No Hit
GAGCAC9262270.2512316665360365No Hit
GAAGAT9050470.24548676091653582No Hit
AGTGCA9036680.24511271819466185No Hit
CAACGG9017860.2446022407453748No Hit
GACACG8989020.24381997880927275No Hit
TACGGC8978420.2435324622862949No Hit
AAGGCG8824120.23934719818294764No Hit
GAGTCG8689840.23570496056922455No Hit
GAGATA8614280.23365545599599757No Hit
CCTGAC8580990.23275249136864548No Hit
CTTCAC8200760.222439056695828No Hit
TTCACA8165220.22147506261784378No Hit
AACTAG8115040.22011397024774682No Hit
GTTGGC7988790.21668953996227958No Hit
CGTTGC7911130.21458307456846265No Hit
ACAGCC7872200.2135271294515261No Hit
GCACAT7806230.21173774595899322No Hit
GCTTCT7765840.21064219950964655No Hit
CAGTAG7632340.20702111877214258No Hit
CTACCG7435650.2016860598188867No Hit
CCTTAT7292660.19780757042071676No Hit
GACTAA7098350.1925370670641295No Hit
ATGGCC6891950.18693863212614584No Hit
TGACAC6809510.18470251305498608No Hit
ACGAAC6739660.1828078876653632No Hit
ATGTGA6702290.18179425630086493No Hit
ATCCGG6425580.17428871884112918No Hit
ATGCCG6417770.17407687883693512No Hit
CTGTTC6356700.17242040392577881No Hit
AAGAGG6290540.1706258668351926No Hit
CCATGA6251620.16957019296025885No Hit
CCGCTC6239960.16925392478498322No Hit
CGTGAA6187660.16783532911029064No Hit
AGGTCA6148520.1667736879112951No Hit
TCGTGG6072200.16470356894585464No Hit
AGTTCC6004010.1628539697286981No Hit
AGAACG5987930.16241781258818078No Hit
GGCAGG5747770.15590366464871297No Hit
TCCACG5745630.15584561886011178No Hit
CATACG5705970.15476987307697013No Hit
TTAGTA5670380.15380452278897191No Hit
GCGTAT5640440.1529924242325609No Hit
AAAAAA5447060.1477471463822349No Hit
GGCCAG5258180.14262392743317312No Hit
GGGGGG4554520.12353771266349492No Hit
CCCCCC4326410.1173504113374123No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)