FastQCFastQC Report
Fri 15 Sep 2023
EGAF00001836086

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836086
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences384952394
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTACC33163030.8614839267631622No Hit
TTACGT32697500.8493907431057567No Hit
TTGAAT31715160.823872263020658No Hit
CTGTAT30973790.804613518002956No Hit
TGTGAT30442780.7908193447940994No Hit
GGCTAC30133990.7827978334380745No Hit
GAAGAT29763030.773161317188743No Hit
AAGCGC29661200.7705160550319892No Hit
GAGATA28197580.7324952497892506No Hit
CAGGAC28103720.7300570262202344No Hit
ACTAAT28045490.7285443716450819No Hit
GGCCGT27728570.7203116653432217No Hit
GTAAGA27658410.7184891023174154No Hit
CGTACT26909780.6990417625510338No Hit
TAGCTT26683820.6931719458276703No Hit
GGACTA26651530.6923331408090945No Hit
CCGTCG26650600.692308981977652No Hit
TCTTCA25443990.6609645867015962No Hit
GTCTCA25380770.6593223057082742No Hit
GCGCAG24820220.6447607648856445No Hit
CCACTT24558390.6379591446312709No Hit
GCACAT24500750.6364618166266035No Hit
GTGGTG23792460.6180623986455842No Hit
CGAATT23652490.6144263646273103No Hit
TGCATA23615350.6134615700039003No Hit
TGATAA23608630.6132870029638002No Hit
AACTAG23272470.6045544946007012No Hit
AGTTAG23173290.6019780721249391No Hit
CCTTAT23142890.6011883640863914No Hit
CTGTTC23034760.5983794453295438No Hit
TAGAGC22885530.59450286208637No Hit
CCTGCT22850700.5935980748829944No Hit
ACTAGC22463890.5835498194096177No Hit
TGACCA22463400.5835370905629437No Hit
GATCAG22448660.5831541860732006No Hit
AACATA22427920.5826154181547966No Hit
GCTGTC22360530.5808648120785553No Hit
CACATT22333740.5801688818695852No Hit
ACCAGG22324070.5799176819770603No Hit
GGTAAT22254260.5781042109845926No Hit
AACCTT22099020.5740715045403769No Hit
CTTAGC21941820.5699878827094657No Hit
GAGAAG21906480.5690698471146538No Hit
CAAGGA21602940.561184716258707No Hit
TTAGTA21574050.5604342338497056No Hit
GTCTGC21571150.5603588998591863No Hit
GAATAC21413510.5562638480435064No Hit
AGGACT21365250.5550101865323118No Hit
GCCAAT21312900.5536502781172469No Hit
GCTTCT20979170.5449808944427554No Hit
ATCCGG20924340.5435565624771774No Hit
CAGTAG20545810.5337233985353523No Hit
TGTGTG20420910.530478841495398No Hit
GACTAA20357680.5288363007296949No Hit
ACTTGA20355420.5287775921715661No Hit
GAGCAC20329490.5281040023873705No Hit
GCTCAA20318520.5278190320853025No Hit
CGATGT20310510.5276109544080404No Hit
ATTGAA20189910.5244780994919596No Hit
CCTCGG20179410.5242053384918033No Hit
TCCAGA20134430.5230368823216098No Hit
TGGCAT19926840.5176442674623294No Hit
TGCGAC19259320.5003039414790599No Hit
GTACTT19160610.4977397283052096No Hit
ACAGCC19139870.49720096038680567No Hit
CCGCTC18980400.49305837022538423No Hit
GCCATA18906730.49114462709381146No Hit
CAGCCT18819230.4888716187591757No Hit
TACAGT18818300.48884745992773326No Hit
ATTCAT18791580.48815334812543076No Hit
TCGTGG18765200.48746806858408576No Hit
CGAGCC18702590.4858416337060109No Hit
TATTCT18593890.4830179079234405No Hit
ACGAAC18540960.4816429327102717No Hit
ACCGCT18511050.48086595351839795No Hit
CTATTA18459230.4795198130395313No Hit
AAGGCG18448830.47924964976318607No Hit
TAAGTC18405720.47812977102825865No Hit
CAGTCC18387290.47765101052988906No Hit
ACACGA18362640.47701067161047456No Hit
AAGCAT18296680.47529721298473077No Hit
GCGTAT18217380.473237218002598No Hit
TACGGC18184350.47237918982782057No Hit
ATGTGA18077330.46959910580527525No Hit
AGACGG18048060.46883875204579195No Hit
GACCGA17963570.46664393519786757No Hit
GACACG17924080.46561809406489885No Hit
CTGAGG17768330.46157213922924717No Hit
CGTTGC17732060.46062994480299296No Hit
CCAGCG17586430.45684687961701564No Hit
CATAAC17538940.455613220579166No Hit
CGTCTC17524610.45524096675704795No Hit
ACAGTG17520160.45512536804745785No Hit
TCGGAC17408660.4522289059981791No Hit
GAGTCG17398630.45196835429993454No Hit
TACTCG17154310.44562159548486924No Hit
CCATGA17032700.44246250355829714No Hit
GGCGTT16910460.4392870459717157No Hit
TTAGGC16864920.43810404254818064No Hit
TTCTAC16789470.4361440599327719No Hit
AACTCT16761940.4354289065676002No Hit
GTCGAG16664340.43289352812805215No Hit
CAGATC16582440.430765992326833No Hit
CTACCG16423300.42663197465398794No Hit
GACTTG16264250.42250029493257285No Hit
TCAATG16251710.42217454036667196No Hit
AATCGG16139220.4192523608516642No Hit
CATGAG16024230.41626523824138106No Hit
TTCCAT16016920.4160753446307961No Hit
AGGCTT15884550.4126367376221591No Hit
CTAGTT15802140.4104959534295038No Hit
AGTGCA15715650.4082491821053592No Hit
CAACGG15695990.4077384696041142No Hit
CTCCGC15693870.40768339785932073No Hit
TTCACA15652460.4066076804291805No Hit
TATGGT15621960.40581537466682177No Hit
CGAAGC15610000.40550468689902475No Hit
TTCTGT15555480.4040884078772608No Hit
AGTAGG15402840.4001232422521316No Hit
GCATAA15361810.39905739617247316No Hit
TGCGGA15360320.3990186900876891No Hit
GAACCG15283010.3970103898093955No Hit
AGTTCC15138600.39325901685391257No Hit
GGTGGT15055090.3910896576993362No Hit
TCAAGC15015870.39007083042065716No Hit
TCATGT14966040.38877638464562975No Hit
CGCTTG14942070.38815371024813006No Hit
TTCGTT14921560.3876209170944914No Hit
GCGGCT14829480.38522893300931127No Hit
AGCCTA14823690.38507852480065363No Hit
ATGGCC14818280.3849379879424779No Hit
ATGCCG14790370.38421296322682436No Hit
TCCTCC14656750.3807418846705497No Hit
ATCCAC14637830.38025039532550614No Hit
GTTGGC14594830.37913337408677084No Hit
CGTGAA14527030.3773721173429045No Hit
GTTACA14494990.37653980663385617No Hit
GACCAT14254380.37028942337217935No Hit
ACGTAA14224960.3695251730269795No Hit
GATTCA14183290.3684427015149307No Hit
ATTGCT14176690.3682712517434039No Hit
AAGAGG14012100.3639956581228587No Hit
TTAGCG14002650.363750173222718No Hit
TACGAA13937880.36206762751032534No Hit
AGAACG13696030.35578503247339205No Hit
CTATGC13651590.35463060401177815No Hit
ACCTGC13581390.3528070018964475No Hit
CACCTA13575150.35264490393064035No Hit
AGATGC13538150.35168374612056574No Hit
AGGTGT13515730.3511013364421368No Hit
GTACGC13320200.34602200707446434No Hit
ATACCT13180670.3423974030409589No Hit
TCCACG13143970.34144403840231735No Hit
AATTGC13089090.34001840757483376No Hit
CAAGCT13078860.33975266042896723No Hit
TAATGA13041030.3387699415112613No Hit
CGAGAG13020050.3382249390557109No Hit
CCTGAC12992660.3375134225038746No Hit
CTTCAC12974870.33705128743789553No Hit
CGTCAG12869460.3343130267687074No Hit
GAGTGA12829040.3332630268042962No Hit
TATAAG12727580.3306273762256431No Hit
CCGGAA12658570.32883468702366353No Hit
AGGTCA12658510.3288331283893769No Hit
TCTCGC12488810.324424791082089No Hit
GGCCAG12487980.32440322997445753No Hit
CCGACT12297320.31945040975638145No Hit
AACAAT12284030.31910517226189794No Hit
AATGTA12271090.3187690268007529No Hit
CGACAA12174720.31626560036408036No Hit
AGAGGT12071320.31357955394349357No Hit
AAGTTG12057410.31321821056138177No Hit
TCTCTG12019770.31224042731891677No Hit
GGATTC11966510.31085687961717157No Hit
GAGCCA11606710.3015102693451492No Hit
CATTAA11529180.2994962540744714No Hit
ATCAGC11202320.2910053340257964No Hit
AGTCAA11150660.28966334990502746No Hit
ATTCGA10951940.28450115314778374No Hit
GCCTGG10849740.28184627941292917No Hit
TATTGG10831990.2813851834364745No Hit
CATACG10790390.28030453033109337No Hit
GATCCT10764440.27963042100213564No Hit
TGACAC10763610.27960885989450424No Hit
ACGCTA10683980.27754029242379513No Hit
GGATCG10321710.2681295183736408No Hit
GGAGGC10080400.26186095104528695No Hit
CTCGTC9748830.2532476782051133No Hit
GGCAGG9157790.23789409139250606No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)