FastQCFastQC Report
Mon 4 Sep 2023
EGAF00001836094

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836094
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences392443196
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCTGT45957821.1710693539454304No Hit
TGTGTG37376390.9524025484697154No Hit
ATGTGA35246020.8981177495048226No Hit
GATCAG35010260.8921102558750948No Hit
CCTCGG34346790.8752041148905534No Hit
CTATTA33924850.8644524951835323No Hit
CTCCGC33783090.8608402526616871No Hit
CGATGT33500900.8536496578730339No Hit
CAGATC33497120.8535533382008234No Hit
ACCGCT32982200.8404324584085795No Hit
GTACGC31241860.7960861678437662No Hit
TGGCAT31079390.7919462056363439No Hit
AATCGG31030770.7907073002228837No Hit
TGACCA30915500.7877700598483558No Hit
GCCAAT30629490.7804821261317014No Hit
GCATAA30365050.7737438261001217No Hit
TGCGAC30060230.7659765873479432No Hit
CTAGTT29822230.7599120153939426No Hit
GGTACC29649690.7555154555412397No Hit
TATTCT29501990.7517518535344923No Hit
AATTGC29344330.7477344568358882No Hit
ACGCTA29204450.7441701193362007No Hit
TTAGGC29176750.7434642847012183No Hit
CAAGCT28813860.7342173413550531No Hit
AGGCTT28710160.7315749207179528No Hit
GAAGAT27901100.7109589434696174No Hit
GATCCT27686300.705485539874158No Hit
ACAGTG27210840.6933701559193295No Hit
CACCTA26737790.6813161821258841No Hit
GACCGA26308700.6703823704462951No Hit
GACTAA26284570.6697675043906227No Hit
TAATGA26094370.6649209431063751No Hit
GCCTGG25924610.6605952215311182No Hit
GAGCAC25242910.643224554720016No Hit
AACTCT24539540.6253017060843629No Hit
CGTCTC24499250.6242750606892927No Hit
CGAGAG24319960.6197065014219281No Hit
TTGAAT24186110.6162958167326718No Hit
ACACGA24028200.6122720496853766No Hit
AGGTGT23946560.6101917486167858No Hit
CCGCTC23768230.6056476514883953No Hit
AACATA23724410.6045310567698058No Hit
TAAGTC23444310.5973937180962108No Hit
CTGAGG23128000.5893336981181858No Hit
TTCTAC23046990.5872694503282967No Hit
TATGGT22859240.5824853184612226No Hit
TCTCTG22830750.581759353524376No Hit
AACCTT22690540.5781866071644162No Hit
TCGTGG22378850.5702443112302041No Hit
AAGCAT22281570.5677654811474933No Hit
CCTGAC22209700.5659341333057536No Hit
GCACAT22202940.5657618790771441No Hit
TTACGT21987960.5602838888306271No Hit
GGCTAC21882050.5575851543110968No Hit
TACTCG21641930.5514665618001949No Hit
AGGACT21394110.5451517625496047No Hit
CTTCAC21322760.5433336650331428No Hit
ACGTAA21223130.5407949536727349No Hit
ATTCAT21207910.540407126844416No Hit
AGTTCC21106200.5378154141828975No Hit
CGAGCC21093820.5374999545157103No Hit
CCTGCT20989800.5348493798322853No Hit
GGATTC20820630.5305386922799395No Hit
TTAGCG20737780.5284275587236834No Hit
GTTACA20650260.5261974270538761No Hit
GTAAGA20551390.5236780815534893No Hit
CTCGTC20484800.5219812754761074No Hit
GTCTGC20306740.5174440583243034No Hit
GAGTGA20116700.512601574063218No Hit
CATAAC20092320.5119803376588544No Hit
TATAAG19765420.5036504697102712No Hit
ACCTGC19458170.49582131116881434No Hit
ATTGCT19448230.4955680261048531No Hit
AGAGGT19408350.4945518280816365No Hit
CCAGCG19386630.4939983721873471No Hit
GCGTAT19364860.49344364222331943No Hit
GTACTT19194380.4890995740438318No Hit
CAGCCT18998370.4841049658560012No Hit
TTCACA18997560.4840843259262418No Hit
GGCAGG18996050.48404584902014713No Hit
AGATGC18908590.4818172462340257No Hit
AATGTA18823600.47965158249297307No Hit
CATTAA18799390.4790346779257194No Hit
GACCAT18766670.4782009266890182No Hit
CAGGAC18693180.47632829898775975No Hit
ACCAGG18613300.4742928451739548No Hit
AGTCAA18529250.472151133943981No Hit
AGTGCA18415110.46924268754553716No Hit
AAGTTG18342910.4674029308435252No Hit
GTCGAG18204510.4638763058080895No Hit
TTCGTT18100690.46123082740361737No Hit
AAGGCG18019040.45915027152107896No Hit
AACTAG17747800.4522386980050993No Hit
ACTAAT17716270.4514352696281681No Hit
CGCTTG17684960.450637447158085No Hit
CGAATT17678940.45048404916160145No Hit
GGATCG17673420.4503433918625003No Hit
TCTCGC17654040.4498495624319602No Hit
CTGTTC17651660.4497889167124202No Hit
ATACCT17641570.4495318094392443No Hit
TGATAA17637150.44941918167438427No Hit
AGTAGG17619570.44897121875442075No Hit
GGAGGC17609360.448711053713873No Hit
AGAACG17398630.4433413593951059No Hit
TACAGT17246020.43945264374006376No Hit
TCCTCC17110840.43600806879577036No Hit
TCAAGC17035590.434090593839726No Hit
GGTAAT17032190.43400395709752604No Hit
GGCCGT17024820.4338161592181101No Hit
GAGAAG16808910.42831447127446187No Hit
ACGAAC16804810.42820999755592654No Hit
CATACG16749060.42678940979779406No Hit
CGTGAA16719100.4260259872106434No Hit
TAGAGC16693160.4253649998304468No Hit
ATCCAC16473940.41977896847012736No Hit
TGTGAT16433540.41874952012163313No Hit
TAGCTT16278160.4147902210030926No Hit
CCACTT16261800.41437334538474196No Hit
TACGGC16228790.413532204543559No Hit
CTATGC16198180.4127522190498112No Hit
CGTCAG16142930.41134437198906104No Hit
CCATGA15896810.4050728911095709No Hit
ATCAGC15864140.40424041394260785No Hit
GAGTCG15772150.4018963804382023No Hit
GCGCAG15643430.39861641530408903No Hit
CGTACT15641890.39857717395615133No Hit
ACTTGA15586880.39717544243014474No Hit
TATTGG15502240.3950186971772598No Hit
ACAGCC15424310.393032932083246No Hit
GACACG15411880.3927161983463207No Hit
GCTGTC15239220.38831658072624603No Hit
TTAGTA15197320.38724891028560476No Hit
ATCCGG15181680.3868503812714847No Hit
TCCAGA14827670.3778297127108301No Hit
CTACCG14665060.37368618310814083No Hit
CCGGAA14657020.37348131269423257No Hit
TCAATG14480340.3689792598672038No Hit
AGGTCA14479450.36895658142586324No Hit
TGCGGA14410550.3672009133265748No Hit
GAGATA14161490.36085451714647643No Hit
CATGAG14039460.35774502254333895No Hit
AAGCGC13986600.3563980760160765No Hit
CGTTGC13698090.3490464388125103No Hit
TGCATA13661420.34811203606648844No Hit
AAGAGG13647890.34776727279532194No Hit
GTGGTG13573940.34588292365247175No Hit
TCTTCA13546130.3451742860640652No Hit
GAGCCA13275960.3382899776404838No Hit
GATTCA12974610.3306111593281388No Hit
CTGGAG12964400.3303509942875911No Hit
CAAGGA12908200.3289189399018145No Hit
GCTTCT12830100.3269288429706907No Hit
GGACTA12742670.3247010046264122No Hit
CTGTAT12615750.3214669060028754No Hit
AGACGG12603690.321159600382013No Hit
GTTGGC12457620.317437533048732No Hit
ATTCGA12342570.3145058985810522No Hit
TCCACG11896780.30314654760889265No Hit
TCGGAC11424330.29110786265230604No Hit
ACTAGC11413040.2908201777054124No Hit
GGTGGT11068130.28203138983711673No Hit
CACATT11000920.2803187852949806No Hit
TCATGT10965240.2794096091297758No Hit
CAGTCC10934930.2786372680544575No Hit
CAACGG10779040.274664973424587No Hit
GCGGCT10576140.2694947984268276No Hit
GAACCG9979140.25428240575229644No Hit
GTCTCA9899420.25225102896165386No Hit
CCTTAT9827890.25042834479413423No Hit
GCTCAA9668120.2463571823525767No Hit
GGCGTT9631010.24541156779285836No Hit
TGACAC9536020.24299109010415867No Hit
TTCCAT9418030.23998454033587066No Hit
CTTAGC8856800.22568361715207316No Hit
AACAAT8333800.2123568476901304No Hit
CCGTCG8324820.21212802476514334No Hit
AGCCTA8210710.20922034280854243No Hit
GAATAC8073810.2057319398652538No Hit
GGCCAG7988300.20355302579892354No Hit
TACGAA7700050.19620801375799618No Hit
AGTTAG7155450.18233084616913578No Hit
ATGGCC7138150.1818900180397063No Hit
ATGCCG6685090.17034541732760733No Hit
GACTTG5552630.14148875701236518No Hit
CGACAA5337220.13599980976609924No Hit
CAGTAG5145430.13111273306417573No Hit
CGAAGC4985070.12702653659970703No Hit
CCGACT4871200.12412497017784965No Hit
ATTGAA4110410.1047389798548068No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)