FastQCFastQC Report
Tue 5 Sep 2023
EGAF00001836098

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836098
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences402579157
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCTAC42307501.050911336674094No Hit
TTCACA41045691.019568183953448No Hit
GCCAAT36243090.9002723904059444No Hit
CCTGCT36229300.8999298490756192No Hit
ATTCAT35830350.8900199967381818No Hit
CCGCTC35349680.8780802330509128No Hit
GACTAA35251450.8756402160184364No Hit
TAGCTT35001670.8694357219293397No Hit
CGTCTC32927090.817903496181249No Hit
TAGAGC32824490.8153549290680243No Hit
TTAGGC31614190.7852912762694269No Hit
TGACCA30936520.7684580650060828No Hit
CTATTA30480560.757132093651833No Hit
TAAGTC30167060.7493448052503126No Hit
TGATAA28112680.6983143441775352No Hit
TGTGTG27530120.6838436496601835No Hit
AATCGG27314150.6784789904063514No Hit
CGTTGC27041360.671702931704435No Hit
TGCGGA27037570.6716087887282252No Hit
GGTGGT26690690.6629923466206672No Hit
GATTCA26638770.6617026623660995No Hit
CACCTA26613580.6610769469120827No Hit
CAGATC26591990.6605406548655474No Hit
CTTCAC26578110.660195877950035No Hit
GCCTGG26153810.649656335784915No Hit
ACCGCT26126680.6489824310501996No Hit
TATTCT25889560.6430924092774132No Hit
TGGCAT25776530.6402847626808459No Hit
ACAGTG25524140.6340154366213251No Hit
AGACGG25452970.6322475855350852No Hit
TCTCTG25365570.6300765839201159No Hit
GTGGTG25348130.6296433771905385No Hit
AGTTCC25286450.6281112561423542No Hit
AAGCAT25277830.6278971367611066No Hit
CAGTAG25115590.6238671218639369No Hit
CCGACT25043850.6220851120715124No Hit
GCGTAT24550970.6098420539938684No Hit
GCGCAG24456940.6075063642701204No Hit
AATTGC24420760.6066076590249306No Hit
CCACTT23892560.5934872579605506No Hit
CGCTTG23759280.5901766046968994No Hit
GATCAG23582990.5857975901121976No Hit
GAGCAC23379040.5807315056800122No Hit
CCTTAT23225600.5769200813344642No Hit
CGTGAA23190430.57604646432304No Hit
TCGTGG23132380.5746045118773996No Hit
TACGGC22653820.5627171602428488No Hit
TCCAGA22549300.5601209006456337No Hit
CGATGT22454010.5577539127292673No Hit
GTTGGC22407420.5565966247974432No Hit
GGCCGT22319310.5544079868993317No Hit
GCATAA22215090.55181917925274No Hit
TGCGAC22018300.5469309480421014No Hit
CCTGAC21952340.5452925124983558No Hit
AAGTTG21916360.5443987752202482No Hit
TTAGCG21850490.5427625752616895No Hit
TCCACG21592900.5363640820580287No Hit
GCACAT21431180.532346983875273No Hit
AGGTCA21422860.5321403164446489No Hit
GATCCT21388390.5312840873180128No Hit
AGAACG21278800.5285618897552612No Hit
GGAGGC21091110.5238997010468677No Hit
GAAGAT20969050.520867750736534No Hit
CCATGA20905530.5192899243911925No Hit
ATGTGA20879690.518648063044158No Hit
GTTACA20799000.5166437367248002No Hit
GACCAT20735130.5150572164370646No Hit
TCAAGC20686130.5138400645018987No Hit
TGTGAT20616890.5121201542980031No Hit
CCTCGG20592190.5115066103633379No Hit
ATACCT20575660.5110960078839849No Hit
CGAGCC20540790.5102298428231842No Hit
AGGCTT20459270.5082048994404348No Hit
ACTTGA20306500.5044101177846124No Hit
CTTAGC20290720.5040181451818182No Hit
AGTAGG20205800.5019087463586696No Hit
GGATTC19960930.49582621586144365No Hit
AAGCGC19728250.4900464829578845No Hit
GGTACC19544120.48547272406355607No Hit
GCTCAA19441910.4829338444861417No Hit
CTACCG19240690.47793557280462984No Hit
ATTGCT19167410.47611530966567156No Hit
ACAGCC19082370.47400293006227345No Hit
ATGGCC19037050.47287718872142204No Hit
GAACCG19019350.4724375236346377No Hit
TATGGT18977120.471388537385208No Hit
AGCCTA18964940.4710859881898953No Hit
TAATGA18924940.4700923947734334No Hit
CGAGAG18728500.46521285750518876No Hit
TTCGTT18717110.46492993177985115No Hit
TTAGTA18682360.4640667474992998No Hit
AGATGC18559480.4610144285239288No Hit
TACTCG18292180.45437474051842186No Hit
GGCGTT18166000.4512404500861926No Hit
GTACGC18155570.4509813706028502No Hit
GAGAAG18122280.4501544524819997No Hit
TTCTGT18068320.4488140949631925No Hit
CACATT17964000.4462228033330598No Hit
GCGGCT17936440.44553821746911754No Hit
TCCTCC17929450.44536458701959075No Hit
AACCTT17763520.4412429131297525No Hit
CTAGTT17719180.4401415148276045No Hit
CATTAA17513590.4350346930653442No Hit
GGCCAG17369160.43144707563685414No Hit
CATACG17325290.43035735205734954No Hit
GGTAAT17246420.4283982342384407No Hit
AACTAG17014500.4226373796097944No Hit
ATCAGC16902240.4198488596864939No Hit
CAGCCT16880040.41929741534035747No Hit
CTATGC16862960.4188731509515283No Hit
GAGATA16857390.418734793068286No Hit
GTACTT16848660.41851794130514314No Hit
ACTAAT16774060.41666488958344156No Hit
GAATAC16713770.41516729590647933No Hit
CTGGAG16704000.4149246107145085No Hit
TTACGT16674520.41419233236657604No Hit
GACCGA16581600.41188421486013493No Hit
TCTTCA16549750.4110930661022771No Hit
ATTCGA16461000.40888853070950215No Hit
ACTAGC16452870.40868658284760634No Hit
GTAAGA16373090.4067048607784729No Hit
AGGTGT16309410.4051230600594655No Hit
GGATCG16282390.4044518877066455No Hit
CGTCAG16233180.4032295194060432No Hit
AGGACT16097160.39985080499336434No Hit
GCTTCT16001980.39748654945889317No Hit
ATCCAC15946060.3960975058626793No Hit
TTGAAT15786430.3921323229359338No Hit
GCTGTC15743440.3910644584115913No Hit
CTCCGC15717080.3904096803501429No Hit
GTCTGC15684410.38959816292724764No Hit
CGAATT15670110.38924295328086245No Hit
CTGTTC15592020.38730321053357464No Hit
ACCAGG15507290.38519853127915415No Hit
CATAAC15479560.3845097226431919No Hit
AATGTA15351440.38132724293026427No Hit
CTCGTC15324910.3806682420967959No Hit
AACTCT15282430.3796130458885133No Hit
ACGAAC15170380.37682974233064925No Hit
TCAATG15118060.37553012214191706No Hit
ACGCTA15083870.37468084816919617No Hit
AGTCAA14926580.37077379045731373No Hit
TGACAC14897930.37006212917277287No Hit
CCGGAA14861120.36914777483127376No Hit
GGCAGG14577020.36209077759085273No Hit
GAGTCG14386880.35736773128570093No Hit
ACGTAA14364450.35681057377741987No Hit
AACAAT13838560.3437475527328405No Hit
CAAGCT13707550.3404932858955736No Hit
CAGGAC13659700.339304699771131No Hit
GTCTCA13627130.33849566633177686No Hit
TCATGT13621010.3383436465390582No Hit
AAGGCG13589790.33756814687750963No Hit
AGAGGT13563310.3369103880358118No Hit
GAGTGA13556340.3367372543829933No Hit
TCTCGC13484220.3349458054531124No Hit
TATAAG13378790.33232694160567283No Hit
TGCATA13262230.3294316103901027No Hit
ATCCGG13192980.327711451787853No Hit
CTGTAT12940260.3214339285826464No Hit
ACCTGC12814400.3183075868977489No Hit
CAAGGA12779970.31745235136452926No Hit
ATGCCG12752910.3167801854182928No Hit
GACACG12585240.3126152902148384No Hit
CTGAGG12464120.30960668934979163No Hit
TCGGAC12405450.3081493362061961No Hit
ACACGA12363330.3071030823386616No Hit
CAACGG12092070.300365028584925No Hit
GGACTA11767870.29231195394450094No Hit
GAGCCA11586520.28780724979261657No Hit
TACAGT11586030.2877950782732649No Hit
AACATA11516450.28606672252532933No Hit
TATTGG11494060.28551055861046476No Hit
ATTGAA11201270.27823770320031743No Hit
CATGAG11020670.2737516289249918No Hit
GTCGAG11000200.2732431574941174No Hit
GCCATA10392590.2581502250997063No Hit
AGTTAG10134050.2517281340524045No Hit
AAGAGG9725860.24158876163576448No Hit
TTCTAC9335740.2318982450450111No Hit
AGTGCA9218840.22899446828540107No Hit
GACTTG9186100.22818121207402697No Hit
CGACAA9038120.22450541322982603No Hit
TACGAA8143060.20227227014636526No Hit
TTCCAT8023330.19929819665254056No Hit
CCAGCG7495250.18618077636840996No Hit
CCGTCG6901070.17142144296357598No Hit
CGAAGC6452610.16028177037491287No Hit
CAGTCC6022500.1495979087660517No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)