FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001836104

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836104
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences364456317
Sequences flagged as poor quality0
Sequence length6
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTGCT38025921.0433601566576771No Hit
CTGTTC32151240.8821699199687626No Hit
TTACGT30949900.8492073962323445No Hit
ATCCGG30874150.8471289578443498No Hit
CCTTAT30156010.8274245387822432No Hit
CTATTA29858070.8192496221707689No Hit
TAGCTT28441410.7803791201676441No Hit
CGTACT28354440.7779928259550514No Hit
AACCTT28174190.7730471029261924No Hit
CTGTAT28017970.7687607181740796No Hit
GGCTAC27444260.7530191883050829No Hit
ACCAGG27302390.7491265407261414No Hit
GGTAAT27097620.7435080347365745No Hit
ACTAGC27025010.7415157520784582No Hit
GGTACC26350070.7229966602554457No Hit
CGTTGC25955920.712181921105239No Hit
GGCCGT25686610.7047925581709701No Hit
GAAGAT24397050.6694094425587909No Hit
ATTCAT24122420.6618741087700779No Hit
GGACTA23674860.6495938990680192No Hit
ATGGCC23488520.6444810778242047No Hit
TGATAA23362410.6410208551824882No Hit
ACTAAT23087250.6334709791845918No Hit
GCTGTC22928450.6291138040556998No Hit
GCACAT22599400.6200852872032947No Hit
CAGCCT22259270.6107527558645663No Hit
TACGGC22226850.6098632116726351No Hit
CATACG22168300.6082567091298351No Hit
TGCATA22108920.6066274329386915No Hit
GTCTGC22083190.6059214498400366No Hit
GTCTCA21869380.6000549031504371No Hit
TTGAAT21669140.5945606918921919No Hit
GCTTCT21542710.5910916890487043No Hit
TTAGTA21442590.5883445834195816No Hit
TCTCTG21398910.587146085877831No Hit
AAGGCG21259050.583308588941264No Hit
TCGTGG20833550.5716336643987981No Hit
CACATT20769800.5698844835772184No Hit
TCTTCA20657420.5668009864677417No Hit
AACATA20461660.5614296980342914No Hit
CATGAG20435100.5607009412872929No Hit
GAGCAC20419810.560281412271419No Hit
CGAATT20237570.5552810873627964No Hit
GAATAC20175220.553570319923965No Hit
TAGAGC20089990.5512317680585024No Hit
CCTCGG19984490.5483370452871036No Hit
GGCCAG19969660.5479301378112758No Hit
ATTGAA19842530.544441928276414No Hit
TACAGT19677660.5399182036951771No Hit
AGGACT19650230.5391655757746133No Hit
GTAAGA19355350.531074619842575No Hit
TGTGTG19303560.5296535990621888No Hit
TCAATG19072970.5233266405422189No Hit
AACTAG18863350.5175750596195593No Hit
GCGCAG18791470.5156028067967333No Hit
AAGCGC18766590.5149201461090329No Hit
TTAGCG18739500.514176847152851No Hit
TTCTGT18640940.5114725450073623No Hit
GACACG18518280.5081069839159901No Hit
CAAGGA18393440.5046816077000525No Hit
CAGATC18356220.5036603604815554No Hit
ACTTGA18283710.5016708216364926No Hit
CAACGG18195270.49924419337201387No Hit
CAGTAG18166510.4984550727378393No Hit
TCCTCC18129090.4974283378932351No Hit
ACAGTG18004420.49400762615948846No Hit
CCGCTC17885930.49075648207244543No Hit
GCTCAA17763500.4873972317510963No Hit
CCATGA17692080.48543760046831624No Hit
TCCAGA17636830.4839216437562804No Hit
GACTAA17513360.48053385777917523No Hit
GTTACA17420670.47799061745992455No Hit
GACCAT17300820.4747021575153546No Hit
AAGAGG17240080.4730355654666839No Hit
GGCGTT17177120.47130806076822646No Hit
ACAGCC17066520.46827340353110136No Hit
GATCAG16971920.4656777563825296No Hit
CAGGAC16662600.45719059384557187No Hit
CTGGAG16607830.45568780743619264No Hit
ACGAAC16583800.45502846915944667No Hit
GATCCT16402290.45004817408611414No Hit
TATTGG16365420.449036530213304No Hit
GAGAAG16337290.4482646956013661No Hit
GTCGAG16312960.4475971258854597No Hit
CCAGCG16262580.4462147928691273No Hit
GAGTCG16024550.4396836946579801No Hit
GCGTAT15895190.43613429809202625No Hit
CGTGAA15561750.4269853278465742No Hit
ATGCCG15457700.4241303903644507No Hit
TATGGT15201500.41710074132149016No Hit
CTAGTT15198030.4170055310085351No Hit
CTTAGC14935970.40981509452064185No Hit
CGAGCC14916080.4092693501043089No Hit
CGTCAG14812360.40642346720526185No Hit
GCCAAT14772160.40532045435777153No Hit
CTCGTC14772080.40531825930732873No Hit
GCGGCT14670960.40254371554767154No Hit
AACTCT14284470.39193915247735983No Hit
CGAGAG14188970.38931881101130705No Hit
TGCGAC14134680.3878291949045844No Hit
GAGATA14023220.3847709408751996No Hit
CTCCGC13957960.3829803284765126No Hit
ATCCAC13865370.3804398319703154No Hit
GTACTT13838810.3797110752233168No Hit
GTTGGC13832260.3795313554683153No Hit
CTTCAC13779080.3780721956864861No Hit
ACGCTA13759620.3775382496662831No Hit
ACGTAA13728810.37669288086451247No Hit
GAGCCA13665300.37495028519426105No Hit
TATAAG13372950.36692874773247514No Hit
GGTGGT13335240.365894055830016No Hit
GTACGC13322790.3655524511048604No Hit
ACCGCT13095080.3593045144008301No Hit
TGACCA13086650.35907321096042355No Hit
TATTCT12959300.3555789650368442No Hit
AATGTA12941100.35507959106111475No Hit
TCCACG12872780.3532050179829919No Hit
TAAGTC12795700.3510900868813861No Hit
TTAGGC12778050.35060580387745066No Hit
TGGCAT12697750.3484025219955235No Hit
AGGCTT12692290.3482527098028047No Hit
CCGGAA12683350.34800741291582554No Hit
ACACGA12306370.33766378646689776No Hit
CGATGT12303270.33757872826224056No Hit
GGAGGC12100640.33201893987201764No Hit
AGTTCC12025370.32995367178667945No Hit
AGATGC11804540.3238945094207271No Hit
CATAAC11622410.31889720270646316No Hit
TGCGGA11587200.3179311061303404No Hit
GCATAA11523070.3161714988191575No Hit
TTCACA11462450.314508199346151No Hit
TACTCG11357910.3116398171800655No Hit
GGCAGG11228150.3080794453618978No Hit
AGTAGG11043810.30302150037915243No Hit
TAATGA11033000.3027248941880736No Hit
ACCTGC11019260.30234789427452835No Hit
AAGCAT10923610.2997234370888953No Hit
AGCCTA10861080.2980077307865678No Hit
CACCTA10712620.2939342659274033No Hit
ATACCT10615390.2912664564955256No Hit
GGATCG10578160.29024493489572306No Hit
CATTAA10469810.2872720134523008No Hit
CTACCG10402420.2854229578355751No Hit
ATGTGA10343420.2838041081340346No Hit
AGTCAA10308470.2828451454718509No Hit
AGAACG10307580.2828207255356751No Hit
GAGTGA10235000.28082926602147495No Hit
AGGTCA10192550.2796645173802818No Hit
AAGTTG10189680.27958576994564754No Hit
TTCGTT10117230.2775978773884169No Hit
GACCGA10075530.2764537073451247No Hit
TGACAC10018860.27489878848772975No Hit
GGATTC9975370.2737055041907807No Hit
CCTGAC9867630.27074932000698454No Hit
TCAAGC9852430.27033226042285885No Hit
AGACGG9835500.26986773287290833No Hit
TCTCGC9727120.26689398828557004No Hit
CCGACT9706890.2663389149048554No Hit
AGGTGT9619420.26393890162699524No Hit
CAAGCT8982000.24644928846164021No Hit
CTATGC8728610.23949674056548184No Hit
ATCAGC8718460.23921824354055576No Hit
AGAGGT8464330.23224539142780173No Hit
CGTCTC7938210.217809642190946No Hit
AACAAT7554990.20729480180748244No Hit
TGCGGC4509530.12373307278962598No Hit
GTGGTG4278500.11739404149222087No Hit
CTGAGG4080500.11196129164637307No Hit
TGTGAT3929330.1078134694534599No Hit
TGGCTT3838020.10530809375434698No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)