FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836136

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836136
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26628888
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATAAC3580671.3446562244732112No Hit
GAAGAT3038861.141189222771901No Hit
CTACCG2978801.1186347698784869No Hit
CTATTA2760051.0364871413331267No Hit
ACTTGA2443070.9174510028357172No Hit
AGACGG2319470.8710352456324875No Hit
AATCGG2186750.8211946364414466No Hit
TGATAA2172380.815798241368547No Hit
CTGTAT2138410.8030414187779827No Hit
AGTGCA2015160.7567570977804255No Hit
GCTGTC1896580.7122265112985566No Hit
ATTCAT1890400.7099057234383952No Hit
GCATAA1854160.6962964431710403No Hit
TCTCTG1830360.6873587811853052No Hit
ATGCCG1811640.6803288218419034No Hit
AATTGC1807610.6788154278165878No Hit
AAGGCG1806940.6785638213657288No Hit
AACTAG1799000.6755820971570424No Hit
CTTAGC1788500.6716390109868651No Hit
ACAGTG1787640.6713160534529268No Hit
TGACCA1779690.6683305739240782No Hit
TGTGAT1778380.6678386269828466No Hit
CCTGAC1776490.6671288714722147No Hit
ACTAGC1771580.6652850092726366No Hit
GTCTCA1756770.6597233801126056No Hit
GGTACC1743090.6545861021308889No Hit
TTCTAC1733620.6510298139374051No Hit
ACTAAT1723940.6473946640205178No Hit
GATCAG1722610.646895206438962No Hit
CGATGT1720100.6459526210782816No Hit
GCCAAT1719020.6455470465007777No Hit
GAACCG1712340.6430384926325126No Hit
TGTGTG1698110.6376946720418817No Hit
TTGAAT1692300.635512831027717No Hit
GGTAAT1679990.6308900319082044No Hit
ACAGCC1664160.6249453600916418No Hit
GACTAA1663380.6246524451190001No Hit
CGTACT1661500.6239464449285302No Hit
ACGAAC1640960.6162330173156311No Hit
TACGGC1619210.608065195963121No Hit
AACATA1612380.6055003122924247No Hit
TTCCAT1609920.6045765035325547No Hit
CTGTTC1609490.6044150247655854No Hit
TAGAGC1607740.6037578437372225No Hit
GGCTAC1604590.6025749178861693No Hit
GTTACA1596500.5995368638750518No Hit
AGCCTA1590470.5972724058173214No Hit
TACGAA1589300.5968330333583588No Hit
CCTGCT1582820.5943995858933351No Hit
TTCTGT1573070.5907381487353134No Hit
TCTTCA1572970.5907005955336926No Hit
AACCTT1546690.5808316141477632No Hit
GAGCAC1545950.5805537204557697No Hit
CCTCGG1537780.5774856238833556No Hit
GACACG1524960.5726713034355773No Hit
TCCAGA1517900.5700200474011532No Hit
TATTCT1511810.5677330574224504No Hit
TTACGT1498680.5628023220496478No Hit
TTAGCG1490450.5597116935562612No Hit
GGATTC1473670.5534102663243016No Hit
TAGCTT1471110.5524489043628108No Hit
TGCATA1470020.5520395744651448No Hit
TGACAC1467840.5512209146698127No Hit
ATGGCC1467430.5510669465431677No Hit
TCAATG1429650.5368793469708536No Hit
TGGCAT1426250.5356025381157486No Hit
CCTTAT1415140.5314303774156848No Hit
GACCGA1409380.5292673130023304No Hit
CTGAGG1402990.5268676634187653No Hit
TACTCG1395340.5239948434947791No Hit
CACATT1395040.5238821838899168No Hit
ACCGCT1392620.522973396410695No Hit
CATTAA1378960.5178436290693025No Hit
TCCTCC1375180.5164241180480387No Hit
ATGTGA1368560.5139380961007459No Hit
GGCCGT1364560.5124359680359165No Hit
CATGAG1363930.5121993828657059No Hit
GAGATA1358830.5102841695830483No Hit
CGTGAA1357320.5097171162385752No Hit
TACAGT1356840.5095368608707956No Hit
ACCAGG1349510.5067842111919957No Hit
AGTAGG1342630.5042005509204891No Hit
CGCTTG1335510.5015267629650927No Hit
GTAAGA1326280.49806060245549866No Hit
GAATAC1319360.4954619209033438No Hit
AGGTGT1316050.4942189099296974No Hit
GTGGTG1314920.4937945587513831No Hit
TGCGGA1314620.49368189914652083No Hit
CGTCAG1305200.49014438755384754No Hit
CATACG1297730.48733916339277855No Hit
GCACAT1291020.48481934356402717No Hit
GGACTA1287940.4836627049541085No Hit
AGTCAA1286580.48315198141206644No Hit
GTACGC1286540.4831369601314182No Hit
CAACGG1285630.48279522599666946No Hit
GAGCCA1284830.48249480038370357No Hit
CAAGGA1280110.48072228926720484No Hit
TGCGAC1278210.4800087784364109No Hit
GCGTAT1276680.4794342144516136No Hit
GTCTGC1276480.4793591080483721No Hit
TCGTGG1275870.47913003351848565No Hit
CAGCCT1271260.47739883092376967No Hit
CCGTCG1269980.4769181499430243No Hit
ATTGAA1269340.4766778094526516No Hit
ACGCTA1263580.4745147450392972No Hit
CCGCTC1255770.47158183999271763No Hit
TATGGT1253430.47070309507479247No Hit
CACCTA1250460.4695877649866566No Hit
CCACTT1249490.4692234989309355No Hit
GTACTT1243390.4669327536320706No Hit
AAGCGC1230140.46195695441732304No Hit
GAGTCG1227580.4609955924558322No Hit
TAAGTC1223030.4592869217820887No Hit
AAGCAT1213490.4557043463474705No Hit
AACTCT1210730.45466787798273817No Hit
CTTCAC1209730.45429234596653073No Hit
CGTCTC1209060.45404073951567187No Hit
GCTTCT1198010.4498911107365805No Hit
AGAACG1194660.4486330784822859No Hit
CTCCGC1192330.4477580888845227No Hit
CCAGCG1192000.44763416331917427No Hit
TTAGGC1191860.4475815888369052No Hit
CGTTGC1189810.4468117482036802No Hit
GGCCAG1182020.4438863537974248No Hit
CTATGC1181280.44360846010543137No Hit
CGAAGC1180500.44331554513278965No Hit
TTCACA1180480.4433080344924655No Hit
CGAGAG1177510.44219270440432956No Hit
AGATGC1177340.44212886396157436No Hit
GGATCG1174690.44113370411862485No Hit
AGTTAG1172000.44012352299502705No Hit
CCGGAA1167970.4386101289697114No Hit
CAAGCT1164860.43744222439930647No Hit
AAGTTG1160760.4359025431328563No Hit
GAGAAG1159510.4354331281125971No Hit
ATACCT1142420.42901528595561333No Hit
AGTTCC1134100.42589085958076806No Hit
TATAAG1133420.4256354978097471No Hit
AGGACT1125590.42269508212284346No Hit
CCGACT1119490.42040433682397854No Hit
CGACAA1113630.41820371920900334No Hit
TCATGT1109800.41676543158692925No Hit
GATCCT1109710.4167316337054705No Hit
CAGGAC1104990.4149591225889718No Hit
CCATGA1099910.41305141994663847No Hit
CTGGAG1096560.41179338769234375No Hit
GGCAGG1090260.4094275359902374No Hit
ATCCGG1085100.4074897907866074No Hit
ATTCGA1083670.4069527800034309No Hit
CAGATC1080760.4058599818362674No Hit
GACTTG1070830.40213094891532836No Hit
TAATGA1064060.39958859716560446No Hit
TTAGTA1062510.39900652254048313No Hit
GGCGTT1058780.39760578812002967No Hit
GCGCAG1056020.3965693197552973No Hit
GCCATA1041160.3909889139944559No Hit
TCGGAC1038100.3898397860248614No Hit
GACCAT1022650.3840378163744577No Hit
TCAAGC1021440.3835834226348468No Hit
AACAAT1019220.3827497415588665No Hit
ACCTGC1017630.38215264565309676No Hit
AGGTCA1008910.37887800647176856No Hit
GTCGAG1004600.37725946348191486No Hit
CTAGTT1002610.37651215476966216No Hit
GCGGCT1001700.37617042063491346No Hit
GGAGGC1001270.3760089418679443No Hit
ATCAGC991220.37223484510506033No Hit
CGAATT976280.36662439678292236No Hit
ATCCAC973800.3656930773827281No Hit
ACGTAA972620.3652499496036034No Hit
TATTGG958580.35997748009605207No Hit
ATTGCT948410.35615831949122323No Hit
GGTGGT944390.3546486807860696No Hit
AATGTA943640.3543670317739141No Hit
ACACGA942740.35402905295932746No Hit
TTCGTT940380.3531427974010781No Hit
GCTCAA927420.3482759024710307No Hit
AGAGGT917820.34467079511544No Hit
AGGCTT912170.3425490392238684No Hit
GTTGGC907440.34077277278720763No Hit
TCTCGC886350.3328528025653944No Hit
GATTCA847380.31821831989379357No Hit
GCCTGG832210.3125214992079279No Hit
CTCGTC805030.3023145390074118No Hit
GAGTGA804640.3021680815210909No Hit
CAGTAG794350.29830385707431717No Hit
CAGTCC793050.2978156654532476No Hit
AAGAGG761160.28583994945639485No Hit
TCCACG727990.2733835524787967No Hit
CGAGCC664320.24947342900687405No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)