FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836156

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836156
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20793198
Sequences flagged as poor quality0
Sequence length6
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTA3025811.4551922219949043No Hit
GGTACC2856741.37388197813535No Hit
AATCGG2270411.091900341640569No Hit
CATAAC2051930.9868275192685608No Hit
TAATGA2002740.9631707445867634No Hit
ATTGCT1992700.9583422424968011No Hit
TCTCTG1956530.9409471308838593No Hit
GCCAAT1848250.88887240914072No Hit
TAAGTC1833310.8816873671861345No Hit
AAGCAT1781070.8565637666702353No Hit
GAGCCA1765730.849186354114456No Hit
ACCGCT1760750.8467913401295943No Hit
TCAAGC1689240.8124002859011875No Hit
TGTGTG1687350.8114913348105471No Hit
TTACGT1663440.7999923821241928No Hit
TGGCAT1653850.7953802969605733No Hit
AGTCAA1623370.7807216571496121No Hit
TATTGG1609270.7739405934575336No Hit
CAGTCC1599260.7691265191626608No Hit
CGAGAG1581500.7605852644696597No Hit
GACTAA1573250.7566176208200394No Hit
TGCGAC1569880.7549968985049823No Hit
TATTCT1567750.7539725250536258No Hit
GGCTAC1566880.7535541189960294No Hit
GATCCT1550520.7456861614072063No Hit
GGATCG1546940.7439644445265226No Hit
CGATGT1495020.7189947404915781No Hit
ACAGTG1454470.6994931707955651No Hit
GAAGAT1446760.6957852274575561No Hit
ATCCAC1445000.6949387968123037No Hit
TGACCA1432660.6890041637654776No Hit
AGTGCA1430110.6877778011828676No Hit
CGTACT1426650.6861137954825419No Hit
GAGATA1424580.6851182776213645No Hit
GTAAGA1410640.6784141621697634No Hit
TTCACA1401060.6738068862711739No Hit
AACTAG1400120.6733548153583686No Hit
CAGATC1371900.6597830694441519No Hit
AATTGC1353690.6510253978248078No Hit
TTCTGT1333840.6414790067405697No Hit
TCTTCA1315190.6325097274599126No Hit
CTATGC1305190.6277004624300697No Hit
ACACGA1291640.6211839083146325No Hit
CCGTCG1274650.6130129670289294No Hit
GGATTC1268810.610204356251501No Hit
TTAGGC1268730.6101658821312623No Hit
GCATAA1268260.6099398466748597No Hit
CAAGCT1266730.6092040291252937No Hit
TACGGC1265970.6088385249830257No Hit
AGACGG1254290.6032213034281692No Hit
GTCTCA1249300.6008214801782775No Hit
CCAGCG1237270.5950359343473764No Hit
ATCAGC1231960.59248221461653No Hit
TTCTAC1222640.5879999796087163No Hit
TTCCAT1209880.5818633574306367No Hit
AGATGC1207470.5807043245584446No Hit
AAGTTG1194700.5745628931153351No Hit
CGAATT1192000.5732643915572776No Hit
CGTCAG1189770.5721919254556226No Hit
AGAACG1186430.5705856309356551No Hit
TGCATA1184470.5696430149898059No Hit
ACTAAT1180700.567829922073555No Hit
AGGTCA1170740.5630398941038315No Hit
TCGGAC1155580.5557490483185896No Hit
ACTTGA1154000.5549891844438745No Hit
TATAAG1150920.5535079308146827No Hit
ATGTGA1147780.5519978215953121No Hit
TAGCTT1146790.5515217043573576No Hit
GTACGC1141010.5487419491701084No Hit
GGACTA1140100.5483043060523927No Hit
ATACCT1127640.5423119618252084No Hit
GAGAAG1119960.538618446282289No Hit
ACCTGC1117150.5372670428089031No Hit
AACCTT1111120.534367055995908No Hit
AGTTCC1109650.5336600940365209No Hit
GAACCG1107250.5325058704293587No Hit
TACTCG1107150.5324577777790602No Hit
AGGCTT1099810.5289277772471556No Hit
GATCAG1099380.5287209788508723No Hit
GTTACA1089190.5238203377854623No Hit
AGTTAG1086460.5225074084323152No Hit
CACATT1065790.5125666576156299No Hit
ACGCTA1064530.5119606902218697No Hit
ACAGCC1058890.5092482647450383No Hit
AGTAGG1042510.5013706886261555No Hit
CTGGAG1034810.49766755455317646No Hit
AGCCTA1033760.497162581725043No Hit
CACCTA1029260.49499841246161363No Hit
GCTGTC1028270.49452229522365915No Hit
CGCTTG1021860.49143955633952985No Hit
CTAGTT1007850.4847017760327199No Hit
GGCGTT1003610.4826626476600665No Hit
GCGCAG1003120.4824269936736042No Hit
CCGACT1000300.4810707809351885No Hit
TAGAGC998140.4800319796887424No Hit
GACCGA996920.47944524935510163No Hit
GGAGGC996120.47906050815271417No Hit
GCACAT992910.4775167340781346No Hit
CAACGG989640.475944104413376No Hit
CTGTTC981800.4721736406299791No Hit
CTTAGC976360.4695574004537445No Hit
CTGTAT971790.46735956633510634No Hit
ATCCGG971730.4673307107449272No Hit
TTGAAT962060.46268015146106917No Hit
CTACCG960510.46193471538144343No Hit
TACGAA953470.4585489928004341No Hit
CGACAA948010.4559231340941398No Hit
GACCAT947570.4557115264328267No Hit
GATTCA938590.4513928064360278No Hit
CCTGCT926210.4454389363290822No Hit
GTGGTG914130.43962934417303196No Hit
CGAGCC904480.43498840341923356No Hit
ATTCGA900300.4329781306367592No Hit
CAGGAC894760.43031379781022616No Hit
CATACG892940.4294385115747948No Hit
ATTCAT889400.4277360317542304No Hit
CTCGTC888930.4275099962978278No Hit
TTAGTA881060.42372510471934144No Hit
TCCACG880860.42362891941874453No Hit
TATGGT880300.4233596005770733No Hit
GAGCAC871050.4189110304244686No Hit
ACGTAA868570.41771833269706754No Hit
ACGAAC867580.4172422154591131No Hit
GCGTAT864260.41564553946920524No Hit
ACTAGC858860.41304853635309No Hit
CCTTAT848790.4082056064680382No Hit
CTCCGC847680.40767177804972565No Hit
GAGTGA844520.40615205030029533No Hit
TCCAGA842140.4050074452231927No Hit
GGTGGT834890.4015207280765566No Hit
ACCAGG834690.40142454277595974No Hit
CCTCGG815550.39221960950884033No Hit
TTCGTT815340.3921186149432136No Hit
TCCTCC811610.3903247590870822No Hit
CGAAGC808030.38860304220639846No Hit
GTCGAG807880.38853090323095085No Hit
GAATAC803830.3865831508938644No Hit
GAGTCG793280.38150937628738013No Hit
CATTAA791950.380869744038411No Hit
TGATAA787400.3786815284498325No Hit
CTTCAC785890.3779553294303262No Hit
TCATGT774940.3726891842226482No Hit
AGGTGT768160.36942850253241466No Hit
GCTCAA765600.3681973306847749No Hit
AACAAT754580.36289752062188796No Hit
AGAGGT752910.3620943733619042No Hit
AAGCGC752540.36191643055580003No Hit
GGTAAT749910.36065159385295137No Hit
CCGGAA747420.35945408686052044No Hit
TGACAC747050.35927614405441627No Hit
GGCCGT740480.3561164569298095No Hit
ATGGCC739550.35566919528203406No Hit
GACTTG738520.35517384098396027No Hit
AATGTA735280.3536156391142911No Hit
ATGCCG725690.34900355395067173No Hit
AACATA723810.3480994121250613No Hit
CCTGAC720930.34671434379646654No Hit
CGTCTC720670.3465893029056906No Hit
CGTGAA716240.3444587984974702No Hit
CCATGA713900.3433334304804869No Hit
TCGTGG706260.3396591519976869No Hit
CAGCCT703450.33830774852430107No Hit
TTAGCG702650.33792300732191366No Hit
GCCATA688050.33090148037834294No Hit
CCGCTC687660.3307139190421791No Hit
GCCTGG673140.32373086621884717No Hit
GGCAGG658980.31692094693658956No Hit
GTCTGC654050.314549979276877No Hit
AAGGCG641080.30831236253317074No Hit
TGCGGA639990.3077881526449178No Hit
TGTGAT637000.30635018240099476No Hit
GGCCAG635270.30551817955083194No Hit
CAAGGA628950.30247872405197124No Hit
ATTGAA623050.2996412576843639No Hit
CATGAG619030.29770793314236704No Hit
GACACG613450.2950243632557147No Hit
AACTCT603780.2903738039718566No Hit
TACAGT599430.2882817736838749No Hit
CAGTAG589050.2832897565828979No Hit
TCTCGC558280.26849164808607123No Hit
AGGACT542890.26109018920514293No Hit
CCACTT533570.25660795419732935No Hit
TCAATG531800.2557567142870471No Hit
CGTTGC526860.2533809373623047No Hit
AAGAGG506840.24375278877255918No Hit
GCTTCT499890.24041034957681834No Hit
GTACTT498970.2399678971940728No Hit
CTGAGG468090.2251168867819178No Hit
GTTGGC390950.18801821634170943No Hit
GCGGCT381280.18336765705785132No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)