FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836232

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836232
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25384854
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTA3360151.3236830119251424No Hit
CCTGCT2935061.1562248890618003No Hit
GCACAT2918391.1496579810937655No Hit
GAATAC2338660.921281642982859No Hit
TTGAAT2243940.8839680543366528No Hit
TTAGCG2220380.8746869294580146No Hit
GGCGTT2191920.8634755196937512No Hit
AGCCTA2130320.8392090811316071No Hit
GGTGGT2049060.8071978668855059No Hit
CGTCTC1996950.7866698780304193No Hit
AAGCAT1973310.7773572382965055No Hit
CGTGAA1973070.7772626937306789No Hit
GACTAA1946940.7669691541263148No Hit
CCGACT1932980.761469811880738No Hit
CACCTA1921250.7568489462259661No Hit
ACCTGC1911600.7530474668083574No Hit
CACATT1904200.7501323426953725No Hit
TTACGT1897430.7474653980676824No Hit
TCAAGC1849540.728599817828379No Hit
ATGCCG1844770.7267207445825766No Hit
TAAGTC1821010.7173608325657497No Hit
GATCCT1814110.7146426762982367No Hit
CCTGAC1810030.7130354186791856No Hit
ACGCTA1806940.711818157394169No Hit
TAATGA1787370.7041088359223969No Hit
AAGTTG1764030.6949143768957663No Hit
AGATGC1763060.6945322592755507No Hit
CAGCCT1759230.6930234855792355No Hit
AAGGCG1755750.6916525893747508No Hit
CTTCAC1725430.6797084592253317No Hit
CCGCTC1685040.6637973966681077No Hit
TATTCT1679760.661717416219924No Hit
TCGTGG1674600.6596847080546534No Hit
TACTCG1673000.6590544109491432No Hit
ATCCGG1666270.6564032237490908No Hit
GGTACC1637710.645152420415733No Hit
GAGCCA1637670.6451366629880952No Hit
AGGCTT1616070.636627652063707No Hit
GGCTAC1606590.6328931417135588No Hit
GGATCG1603540.6316916378561799No Hit
TGCGAC1598220.6295958999803584No Hit
AGACGG1585260.6244904934257254No Hit
CCTTAT1578280.621740822302937No Hit
GTTACA1570480.6186681239135746No Hit
TGTGTG1565970.6168914739474176No Hit
CTCGTC1562770.6156308797363972No Hit
CATTAA1552580.6116166750456788No Hit
AGTCAA1545910.6089891239870829No Hit
GTACGC1543310.6079648911906288No Hit
CAGTAG1518230.5980849840617559No Hit
CAGGAC1517930.5979668033544727No Hit
ATCCAC1513920.5963871212337877No Hit
AGTTCC1512700.5959065196908362No Hit
GAGAAG1506510.5934680577638933No Hit
TTAGGC1501750.5915929238750004No Hit
AGGACT1488290.5862905494748956No Hit
CATAAC1483430.5843760220169082No Hit
TTCACA1481000.5834187582879146No Hit
CTGTAT1478740.5825284636263813No Hit
TTCTGT1476600.5816854412477613No Hit
CGTCAG1474060.5806848445927638No Hit
GCCAAT1467390.578057293534168No Hit
GTAAGA1462450.5761112512209052No Hit
TATTGG1447900.5703794869176715No Hit
AAGAGG1444590.5690755597806472No Hit
GGATTC1443190.5685240498133257No Hit
TCCTCC1433570.5647343884664454No Hit
TGACCA1428990.5629301630019223No Hit
CCATGA1412480.5564262847444386No Hit
AGGTGT1408540.5548741781221196No Hit
AATCGG1402890.5526484414682865No Hit
TCTCTG1399400.5512736059068923No Hit
TTAGTA1395850.5498751342040414No Hit
GAAGAT1386080.5460263825035196No Hit
GCTTCT1384960.5455851745296624No Hit
ATGTGA1367960.5388882677836162No Hit
CTGGAG1365850.5380570634757246No Hit
TGCGGA1364330.5374582812254898No Hit
ACTAGC1362470.5367255608403341No Hit
AACATA1360860.5360913243779144No Hit
TTCCAT1356510.5343777041223085No Hit
GCATAA1356160.5342398266304782No Hit
AATGTA1349770.5317225775653466No Hit
AGGTCA1348640.5312774302345801No Hit
CTACCG1345980.5302295612966692No Hit
GACCGA1343950.5294298718440531No Hit
AACAAT1340290.5279880672151985No Hit
CGAATT1332890.5250729431022136No Hit
AACTAG1305340.5142200148167092No Hit
CAAGCT1295690.5104185353991005No Hit
AACCTT1295010.5101506591292587No Hit
GCGTAT1293740.50965036080176No Hit
ACACGA1286760.5069006896789715No Hit
CGATGT1271840.5010231691700886No Hit
CGAGCC1268470.4996956058916076No Hit
ACAGTG1259960.49634321316167507No Hit
GGCCAG1253760.49390081187782287No Hit
CGAGAG1250740.49271112609117235No Hit
TACGAA1244850.4903908448715128No Hit
GGACTA1230790.4848521090568415No Hit
CGTTGC1217300.4795379165860083No Hit
ACAGCC1215570.47885640784067535No Hit
TGCATA1207340.4756143171042071No Hit
GAGATA1203650.4741606944046241No Hit
TCAATG1200850.47305767446998115No Hit
TGGCAT1197170.47160799112730767No Hit
TTCGTT1189980.46877559350942105No Hit
TACGGC1189720.4686731702297756No Hit
CTCCGC1173290.46220080682756737No Hit
ATTGAA1165360.4590768967983822No Hit
TCTCGC1155180.4550666314645733No Hit
TATGGT1155180.4550666314645733No Hit
CTAGTT1154330.454731786127271No Hit
ATTCAT1153050.45422754844286284No Hit
GTCTGC1152060.45383755210882837No Hit
TATAAG1143850.45060334008617897No Hit
AATTGC1133120.4463764101223509No Hit
GAGCAC1128580.44458794208546565No Hit
AGAGGT1126960.44394976626613647No Hit
ATACCT1122570.4422203885828928No Hit
CAGATC1117350.4401640442761656No Hit
TGACAC1105180.43536984691737834No Hit
GACCAT1104940.4352753023515519No Hit
CAACGG1100280.4334395620317533No Hit
AGTAGG1097570.4323719963092953No Hit
ACGAAC1096150.431812607628155No Hit
CTATGC1093830.43089867682516514No Hit
TGTGAT1085470.4276053744488741No Hit
ACGTAA1081150.4259035722639965No Hit
GGAGGC1067940.4206996817866276No Hit
GTCTCA1067660.42058937979316324No Hit
ATCAGC1067300.4204475629444235No Hit
GAACCG1066420.42010089953639285No Hit
AGTGCA1060070.41759940789889904No Hit
GCGGCT1055980.41598821092293853No Hit
ACTAAT1051760.41432580230715527No Hit
GCTGTC1043720.4111585593519663No Hit
ATTGCT1036780.4084246456568157No Hit
ACCGCT1020850.40214925010007935No Hit
CGCTTG1020540.40202713003588675No Hit
GGCAGG1017910.40099107916870436No Hit
TGATAA1006190.3963741528708418No Hit
AGAACG1003610.3953577987882065No Hit
GAGTGA993390.39133177602675995No Hit
TAGAGC991520.3905951162846948No Hit
GATTCA985990.388416651913775No Hit
CTTAGC985140.38808180657647273No Hit
ATGGCC972540.3831182168705796No Hit
AGTTAG961770.3788755294791138No Hit
ACCAGG949230.3739355759146773No Hit
CCTCGG948710.3737307293553865No Hit
TCGGAC948210.3735337615099145No Hit
GTACTT943360.37162317340883666No Hit
CTGTTC935640.3685819898747497No Hit
ATTCGA934910.3682944168203607No Hit
GAGTCG927020.3651862642188133No Hit
CATGAG914850.36039206686002606No Hit
TCCACG906840.3572366419755654No Hit
CGACAA906700.3571814909788333No Hit
CATACG906530.35711452191137283No Hit
CGTACT880340.34679734616555213No Hit
GCCATA879860.346608257033899No Hit
CAAGGA846730.33355716759292764No Hit
AACTCT843770.33239111794773374No Hit
TCTTCA842870.3320365758258842No Hit
GACACG829040.3265884452201301No Hit
CGAAGC809580.3189224566743618No Hit
GTGGTG804990.31711429185292933No Hit
GCGCAG803450.31650763088887574No Hit
GATCAG770540.303543207299912No Hit
GCCTGG769300.30305472704314157No Hit
TACAGT761520.299989907367598No Hit
TCCAGA742970.2926824003005887No Hit
AAGCGC740430.2916818036455912No Hit
GGCCGT735310.28966485290795846No Hit
TTCTAC726960.28637548988857686No Hit
GGTAAT714900.2816246254557934No Hit
CAGTCC710530.2799031264863686No Hit
CCACTT687190.27070866745973804No Hit
GTTGGC675670.26617052830006427No Hit
CCAGCG655230.258118482777171No Hit
ACTTGA646300.254600637057042No Hit
CCGGAA637860.2512758198254755No Hit
GCTCAA632290.24908159802691796No Hit
TAGCTT604990.2383271536641495No Hit
CTGAGG603360.23768503848791092No Hit
GTCGAG553300.21796461779925938No Hit
CCGTCG549450.21644796538912536No Hit
TCATGT535420.21092104764518244No Hit
GACTTG510850.20124204771869084No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)