FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences28038841
Sequences flagged as poor quality0
Sequence length6
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTACC3185891.1362416870226555No Hit
AAGTTG2931331.045453340956568No Hit
CTTAGC2873401.024792715219577No Hit
CATTAA2798220.9979799093692924No Hit
CGAAGC2593740.9250525012784944No Hit
CTGTTC2579150.9198490051710768No Hit
AATCGG2497940.8908856111420582No Hit
TGATAA2454790.8754962446557617No Hit
CTATTA2383430.8500458346334644No Hit
GACCGA2362560.8426025883166854No Hit
ACTAAT2334880.832730568285615No Hit
GCGTAT2322410.8282831661979181No Hit
AATGTA2268920.8092060581248703No Hit
GACTAA2230210.7954002093025172No Hit
TGTGAT2168830.7735091475428674No Hit
AACTAG2159340.7701245568602496No Hit
TACGGC2142940.7642755276510894No Hit
CCACTT2110280.7526273999699202No Hit
TTCGTT2060150.7347486295885055No Hit
GGCTAC2051100.7315209640797921No Hit
TCTTCA2037000.7264922255524043No Hit
TATAAG2034220.7255007437718272No Hit
GTGGTG1977400.7052359974508219No Hit
ATGGCC1936390.6906098579466962No Hit
GAGATA1908720.6807414043968508No Hit
GTAAGA1880980.6708479854784297No Hit
GCCAAT1880180.6705626669804219No Hit
ACTTGA1876940.6694071270634903No Hit
GCCATA1866610.6657229519579643No Hit
CTGTAT1865110.6651879797741997No Hit
GTCTCA1864480.6649632914570185No Hit
TGTGTG1862000.6640788041131942No Hit
TGCGGA1861150.663775653209061No Hit
CAAGGA1849310.6595529394385452No Hit
GTACTT1832110.6534185917313773No Hit
ACAGCC1813670.646842000352297No Hit
TAGAGC1813460.64676710424657No Hit
TCTCTG1808410.6449660312278956No Hit
AGCCTA1789380.6381790174565347No Hit
GAAGAT1784190.6363280137007089No Hit
TAAGTC1769320.6310246561189886No Hit
CCGACT1765530.6296729597346766No Hit
CCTCGG1758650.6272192206518094No Hit
CCTTAT1757190.6266985143929451No Hit
TAGCTT1754440.6257177320560432No Hit
TTGAAT1743160.621694741234133No Hit
CAGATC1738630.6200791252391638No Hit
GCGCAG1713660.6111736216200948No Hit
CTGAGG1710820.610160740952167No Hit
ATGCCG1710520.6100537465154141No Hit
ATTGCT1710110.6099075207851851No Hit
GCTGTC1688440.6021789559703983No Hit
AACATA1680150.5992223430347924No Hit
CCTGCT1677500.5982772255101415No Hit
AAGCGC1667060.5945538191111395No Hit
TATGGT1659190.5917469983869875No Hit
AGACGG1657130.5910123032546174No Hit
CACCTA1639300.5846532672302682No Hit
CATACG1628000.5806231434459077No Hit
ATTCGA1626580.5801167031119439No Hit
AGGTCA1618140.5771065929579614No Hit
CCGCTC1617390.5768391068660791No Hit
TTCTGT1612710.5751699936527334No Hit
GAATAC1601400.5711363033871478No Hit
CGATGT1594260.568589835792428No Hit
ATACCT1591040.5674414288379466No Hit
TTAGTA1583450.5647344695880975No Hit
AACCTT1581260.563953410199801No Hit
CGTCAG1579710.5634006056099109No Hit
TTACGT1567320.5589817353720148No Hit
CAGGAC1563300.5575480099195256No Hit
GAGTCG1546180.5514421940621582No Hit
TCCTCC1543090.5503401513636031No Hit
ATGTGA1539520.5490669175662432No Hit
TGACCA1525310.5439989477453794No Hit
TCGTGG1519950.542087313808727No Hit
TGCATA1507040.5374829865471258No Hit
ATCCGG1500760.5352432363377645No Hit
ACGAAC1493960.532818029104698No Hit
AGTCAA1490970.5317516512183939No Hit
TCAAGC1480180.5279034179765133No Hit
GACACG1471240.524714983761276No Hit
CTTCAC1468860.5238661612297028No Hit
GGACTA1466260.5229388761111773No Hit
GTTACA1456850.5195828172783604No Hit
AAGCAT1455570.5191263076815479No Hit
ACACGA1455550.5191191747190977No Hit
TATTGG1454850.5188695210333408No Hit
GCACAT1438910.5131845499605351No Hit
ATTGAA1425000.5082235745764242No Hit
CATAAC1422190.5072213933521718No Hit
CTGGAG1406080.5014757920985393No Hit
AGATGC1405390.5012297048940075No Hit
GGTGGT1394850.49747063368275457No Hit
GCGGCT1376040.4907620824983458No Hit
TAATGA1368470.4880622562109468No Hit
CGAGCC1364320.4865821665025313No Hit
AATTGC1361640.4856263495342051No Hit
TTCTAC1356170.4836754843040766No Hit
CATGAG1353690.4827909969602524No Hit
GATTCA1352940.4825235108683701No Hit
GGATTC1351950.48217042922708536No Hit
GCCTGG1344840.4796346610760409No Hit
CAGTAG1335590.4763356659428255No Hit
ACAGTG1323160.47190252978002906No Hit
TTCCAT1322170.47154944813874433No Hit
TCATGT1321190.47119993297868484No Hit
GGCGTT1308100.46653140905503193No Hit
TATTCT1284500.4581145133638013No Hit
TACTCG1282040.4572371589824272No Hit
CCGGAA1276090.45511510265349414No Hit
CTAGTT1271950.4536385794263037No Hit
CGTACT1271600.4535137525834253No Hit
GCTCAA1258850.44896648902142566No Hit
CGAGAG1257210.44838158610050965No Hit
CTCCGC1253760.4471511500778509No Hit
ATCCAC1250100.4458458179494652No Hit
AACTCT1249050.4454713374208299No Hit
GGCCAG1247320.44485433616888803No Hit
GTACGC1247240.4448258043190872No Hit
GATCCT1233820.4400395865150061No Hit
AGTGCA1224960.43687968414956957No Hit
CAACGG1220710.435363929628903No Hit
CGTCTC1219460.43491811947576575No Hit
CACATT1218550.4345935696842819No Hit
ATCAGC1212520.432442981505548No Hit
AGAACG1211800.43218619485734094No Hit
TCCAGA1211760.43217192893244055No Hit
TGGCAT1208650.4310627532714352No Hit
AAGGCG1207150.4305277810876705No Hit
ACGCTA1196670.4267901087637681No Hit
ACCAGG1194390.42597695104444583No Hit
TACGAA1186840.423284257719497No Hit
AACAAT1186340.4231059336582421No Hit
TGCGAC1177580.4199816961050566No Hit
AGTTCC1173220.418426710290914No Hit
ACCGCT1170760.4175493559095399No Hit
CCTGAC1169830.4172176731556059No Hit
GCATAA1169130.416968019469849No Hit
ACCTGC1166920.4161798271191024No Hit
GACTTG1162900.4147461016666131No Hit
GACCAT1159290.41345860194435285No Hit
AGGTGT1154310.4116824942942542No Hit
GTCTGC1145430.40851545896636743No Hit
GAACCG1140920.40690697593384834No Hit
ACGTAA1139520.4064076685623347No Hit
TGACAC1134160.4044960346256823No Hit
CGAATT1133290.4041857507590988No Hit
TCCACG1122260.40025192196781595No Hit
GGTAAT1121450.3999630369885831No Hit
GAGCCA1112320.3967068396300689No Hit
AGTTAG1108290.39526954769635453No Hit
TTAGGC1097960.39158537259082854No Hit
TCGGAC1096330.39100403615113766No Hit
CAGCCT1082450.386053760210702No Hit
GGATCG1068970.3812461435192703No Hit
GATCAG1060930.3783786926142917No Hit
TTCACA1047110.37344981556120666No Hit
GGCAGG1025900.36588530888277443No Hit
GGAGGC1017140.36276107132958885No Hit
CGCTTG1010110.3602538350283451No Hit
TACAGT993900.35447256896246176No Hit
CAGTCC985620.3515195225080809No Hit
GAGTGA958110.34170813265783706No Hit
CCATGA945720.33728926241994095No Hit
AGTAGG940320.3353633625583882No Hit
AAGAGG940320.3353633625583882No Hit
ATTCAT940060.3352706340465356No Hit
AGAGGT939800.33517790553468313No Hit
CGTGAA936630.33404733098632716No Hit
GTTGGC922680.3290720896773158No Hit
GGCCGT919570.32796291401631045No Hit
CTATGC915660.32656841985729723No Hit
CCGTCG899090.3206587604673103No Hit
AGGCTT881120.31424979370580974No Hit
TTAGCG880450.3140108394637282No Hit
CAAGCT879170.31355432986691567No Hit
GAGAAG844810.30129990037747995No Hit
CGACAA826200.2946626788175731No Hit
CTACCG818930.29206984696692706No Hit
GTCGAG809840.2888279155333132No Hit
CCAGCG731080.26073830940444365No Hit
TCTCGC697070.24860870675788632No Hit
CTCGTC659430.23518447142661852No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)