FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836254

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836254
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences24144350
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGCC3105371.286168399646294No Hit
GGTACC3014791.2486523762288073No Hit
GCCAAT2408040.9973513472095956No Hit
AAGCGC2192090.9079101321841341No Hit
CGTACT2046590.8476475862883035No Hit
GCACAT2041560.8455642831552723No Hit
CGCTTG1950450.8078287466840068No Hit
ACAGTG1889000.7823776577128811No Hit
AACTAG1850300.7663490630313097No Hit
TGACCA1814570.7515505698020447No Hit
CATACG1773210.7344202680958485No Hit
GATCAG1767570.7320843178631854No Hit
GTCTCA1738290.7199572570808491No Hit
TTAGGC1708540.7076355337791244No Hit
ACTAGC1695540.7022512513279505No Hit
GCATAA1688740.6994348574304133No Hit
TAGAGC1668650.6911140701654839No Hit
CCTGCT1658250.6868066442045448No Hit
AGTTCC1646950.6821264602277551No Hit
TCTTCA1643810.6808259489280101No Hit
GGACTA1632720.6762327418215857No Hit
TATAAG1631740.6758268497598817No Hit
CGATGT1626100.6734908995272186No Hit
CTATTA1622430.6719708751736949No Hit
CGAATT1621240.6714780062416259No Hit
GCTGTC1619210.6706372298280965No Hit
AGGTGT1605870.6651121276820456No Hit
GCCATA1594240.660295265766111No Hit
CAAGGA1593500.6599887758419671No Hit
CAGGAC1587170.6573670444638187No Hit
ACTTGA1570850.6506076991097296No Hit
TGTGAT1549760.6418727362716329No Hit
CCTTAT1542490.6388616798547072No Hit
ATTCAT1519730.6294350438094213No Hit
TACGGC1512520.6264488379268857No Hit
ATGTGA1504740.6232265519676445No Hit
GACTAA1504620.6231768508988645No Hit
CTTAGC1498750.620745640284373No Hit
ACTAAT1495920.6195735234123096No Hit
GTAAGA1468760.608324514845088No Hit
GAGCAC1450070.6005835733825926No Hit
AGTTAG1432080.5931325548213142No Hit
TATTCT1428740.5917492084069358No Hit
GAAGAT1406350.5824758173237218No Hit
TGCGAC1401510.5804712075495924No Hit
GTCTGC1395260.5778826102172973No Hit
ATTGCT1391850.576470271512797No Hit
GAACCG1385520.5738485401346485No Hit
TCTCTG1382750.5727012737969753No Hit
TACTCG1380870.5719226237194208No Hit
CATAAC1372210.5683358632557928No Hit
TGATAA1371640.5680997831790874No Hit
CTGGAG1370830.567764300964822No Hit
CGTCTC1368000.5665921840927588No Hit
CTTCAC1363810.564856788441188No Hit
GTTACA1352660.5602387308003736No Hit
AGTAGG1348280.5584246417899011No Hit
TTAGTA1346410.5576501334680785No Hit
GACCGA1329910.5508162365108193No Hit
ATCAGC1321880.5474904066582865No Hit
ACAGCC1307320.5414600103129718No Hit
CGTCAG1301590.5390867842787236No Hit
AATGTA1296100.5368129603820356No Hit
ACCTGC1293950.535922482899726No Hit
GAATAC1287510.5332551922085291No Hit
AAGCAT1283120.531436961442325No Hit
CAGATC1269140.5256467869294472No Hit
TAAGTC1257160.520684963562904No Hit
GGTAAT1254400.5195418389809624No Hit
CTGTAT1249180.5173798424890295No Hit
CATGAG1247230.5165722001213535No Hit
AGTCAA1245330.5157852665323357No Hit
CGAAGC1245100.5156900061505073No Hit
AAGTTG1236680.5122026478244393No Hit
TGTGTG1228360.508756707055688No Hit
TTCTGT1223900.5069094839993622No Hit
GCGTAT1218120.5045155491864556No Hit
CTACCG1215080.5032564554440273No Hit
TATGGT1214570.503045225901712No Hit
GCGCAG1211080.5015997531513584No Hit
ATTGAA1210500.5013595313189214No Hit
TGGCAT1209940.5011275929979477No Hit
AGAGGT1209440.5009205052113641No Hit
AATCGG1207520.5001252881108831No Hit
CTCCGC1205660.49935492154479205No Hit
AGATGC1204250.49877093398662625No Hit
ATTCGA1201930.4978100466568783No Hit
ATCCAC1200520.49722605909871254No Hit
CCGCTC1199000.49659651222749834No Hit
TAGCTT1198490.49638528268518306No Hit
AGTGCA1197760.49608293451677105No Hit
ATACCT1196160.49542025359970343No Hit
TTGAAT1195240.4950392120723896No Hit
TCCAGA1195180.4950143615379996No Hit
AACATA1192880.494061757719715No Hit
TTCCAT1192760.4940120566509349No Hit
TCAAGC1184100.4904252961873068No Hit
CGTGAA1183930.4903548863398683No Hit
GCTCAA1182240.4896549296212157No Hit
CACCTA1182180.4896300790868257No Hit
GATCCT1173680.4861095867149043No Hit
GAGATA1172560.48564571007295704No Hit
ACGCTA1171060.4850244467132062No Hit
CAAGCT1151820.4770557086854688No Hit
CACATT1148960.4758711665462106No Hit
GAGTGA1148380.4756309447137736No Hit
TCTCGC1143890.4737712963902528No Hit
TTCTAC1140190.4722388467695341No Hit
TCGGAC1138930.47171698554734337No Hit
CGTTGC1130550.4682461942442021No Hit
AAGAGG1128310.4673184409603075No Hit
GCTTCT1124870.4658936769886123No Hit
CCTGAC1113610.46123006003474937No Hit
GGCAGG1111700.46043898468999994No Hit
CGAGAG1107470.4586870220155026No Hit
TTCGTT1102570.4566575617069832No Hit
ACACGA1101220.45609842468320744No Hit
GGATTC1094280.453224046205427No Hit
TTCACA1087180.45028339963593966No Hit
GAGAAG1083490.44875509177095263No Hit
TAATGA1071420.4437559926028243No Hit
AACCTT1069890.4431223039758785No Hit
ACCGCT1069560.4429856260367332No Hit
TGCATA1067560.4421572748903988No Hit
CATTAA1056520.43758477656263267No Hit
AAGGCG1056160.4374356733562925No Hit
ATCCGG1050850.4352364010627745No Hit
TCGTGG1047570.43387790518278607No Hit
GAGCCA1043610.4322377699130438No Hit
TTACGT1042980.43197683930194847No Hit
CTAGTT1042530.43179046029402324No Hit
GGATCG1039010.43033256227647465No Hit
CGACAA1035980.4290776102897779No Hit
CGAGCC1034320.42839007883832037No Hit
TGCGGA1032270.4275410189133275No Hit
CTGTTC1026470.4251388005889577No Hit
AGGTCA1017540.4214402127205744No Hit
CCATGA1014250.42007757508485427No Hit
CCGGAA1010940.4187066539376707No Hit
TACAGT1006940.41704995164500186No Hit
GGCGTT1003370.4155713448487948No Hit
CTCGTC1001270.4147015761451437No Hit
AATTGC996790.41284606957735454No Hit
TTAGCG996520.41273424217259935No Hit
TATTGG995190.41218338866028703No Hit
TACGAA993710.4115704088119995No Hit
GACTTG988250.4093090101825065No Hit
AGGACT987740.4090977806401912No Hit
GACCAT987300.40891554338799757No Hit
ACGAAC985460.4081534603333699No Hit
CAGCCT975900.40419394185389135No Hit
TCCTCC971430.40234257704183385No Hit
ATGCCG967510.40071900879501826No Hit
AGGCTT962020.3984451848983303No Hit
TCATGT959480.39739317894248555No Hit
GACACG954500.3953305845881127No Hit
CTATGC953470.39490398374775054No Hit
TCCACG953230.3948045816101904No Hit
CCAGCG951770.39419988527336625No Hit
ACCAGG948860.3929946343554497No Hit
CAGTAG948290.39275855427874434No Hit
AGCCTA947750.39253489946923403No Hit
AACTCT947670.3925017654233806No Hit
GTACGC945360.39154501984936435No Hit
TGACAC942540.39037704473303275No Hit
AGAACG942440.390335627175716No Hit
TCAATG935270.3873659883161071No Hit
CAGTCC930370.3853365280075877No Hit
GATTCA925590.3833567687678484No Hit
CCTCGG924690.3829840107519979No Hit
GGAGGC917950.3801924673888508No Hit
GAGTCG912270.377839950133261No Hit
GTCGAG893340.3699996065332055No Hit
ACGTAA890540.3688399149283373No Hit
CAACGG882140.3653608401137326No Hit
GGCCAG880320.36460704057056825No Hit
CCGACT871400.3609125944579167No Hit
GTGGTG861530.3568246815507562No Hit
CCACTT853970.353693514217612No Hit
GCCTGG849730.35193740978738297No Hit
CTGAGG846460.35058305566312614No Hit
GGTGGT827160.34258946710099875No Hit
AACAAT826330.34224570137527No Hit
CCGTCG803110.3326285445663271No Hit
GGCCGT796820.3300233802111053No Hit
GTACTT707470.2930167927486141No Hit
GCGGCT692630.2868704272428125No Hit
GTTGGC666730.2761432798977815No Hit
AGACGG432190.17900254096714138No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)