FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836292

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836292
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences21742548
Sequences flagged as poor quality0
Sequence length6
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACT3099921.425739062413476No Hit
GGCTAC2743311.2617242468546004No Hit
CTTAGC2452941.1281750418580196No Hit
GTACTT2322241.0680624920317527No Hit
TCATGT2241091.0307393595267675No Hit
CTGTTC2068470.9513466406973092No Hit
TGTGAT2041540.9389607878524633No Hit
GGTAAT2031920.9345362834199561No Hit
CCGTCG1978800.9101049242250725No Hit
GGCCGT1901690.874639899610662No Hit
TAGCTT1885890.8673730420188103No Hit
CTTGTA1810960.8329106597809971No Hit
CCTTAT1736370.7986046529597175No Hit
GCTCAA1730180.7957577005234161No Hit
CAGTAG1666260.7663591222151148No Hit
TTCTAC1653380.7604352534946686No Hit
ATACCT1647660.75780446707534No Hit
GTCGAG1646820.7574181278109631No Hit
AGTTAG1645000.7565810594048131No Hit
GTCTGC1622670.7463108739601265No Hit
AAGCGC1619130.7446827299173951No Hit
GATCAG1616040.7432615533377229No Hit
TTGAAT1601080.7363810350102481No Hit
TCTCTG1589960.7312666390342107No Hit
ACTAAT1587510.730139816179778No Hit
GGCGTT1575540.7246344816624067No Hit
CGAAGC1572590.7232776949601307No Hit
CCATGA1535360.7061545868497106No Hit
GAATAC1525360.7015553098928423No Hit
AACATA1516710.6975769353251514No Hit
AGACGG1502560.6910689584311829No Hit
CTGAGG1495610.6878724609461596No Hit
GGCCAG1481970.6815990471769914No Hit
CTGTAT1480550.680945949849116No Hit
ACTAGC1469690.6759511350739573No Hit
ACTTGA1450450.6671021262089429No Hit
GTAAGA1446320.6652026248257564No Hit
TATAAG1441580.6630225675482009No Hit
ATGCCG1435490.6602216078814681No Hit
AGTCAA1391730.6400951719182131No Hit
CAACGG1389990.639294897727718No Hit
AGCCTA1384700.6368618802175348No Hit
AACTCT1378770.6341345089821119No Hit
TGCGGA1360890.6259110017832317No Hit
TTCTGT1356980.6241126844930962No Hit
ATTCAT1353590.6225535296047179No Hit
TGATAA1349060.6204700571432565No Hit
AACCTT1342940.6176552996456532No Hit
GTCTCA1339650.6161421375268437No Hit
AAGCAT1328110.6108345719186178No Hit
CCAGCG1321080.6076012802179396No Hit
ATTGAA1317640.6060191289447768No Hit
CTACCG1315430.605002688737309No Hit
GCATAA1314860.6047405299507675No Hit
CCTGCT1307670.6014336498187792No Hit
TCAATG1304440.5999480833617109No Hit
TTAGGC1287450.5921339118119918No Hit
CATAAC1284050.5905701576466567No Hit
TACGAA1277160.5874012558233745No Hit
GACACG1270840.5844945127866338No Hit
TCGGAC1265940.5822408670777685No Hit
GTACGC1261490.580194188831962No Hit
TCAAGC1249600.5747256485302459No Hit
TACGGC1245260.5727295623309651No Hit
GAGATA1242360.5713957720134732No Hit
CTTCAC1230450.5659180331578433No Hit
TTACGT1227360.5644968565781711No Hit
GTTACA1214910.5587707567668702No Hit
ACGAAC1212830.5578141071598417No Hit
CACATT1201990.5528284909385965No Hit
GGACTA1188330.5465458786155146No Hit
TAATGA1185380.5451890919132385No Hit
GATTCA1173940.5399275190745814No Hit
AGATGC1172440.5392376275310511No Hit
ATCAGC1170320.538262580816195No Hit
TACTCG1170050.5381384003383596No Hit
AAGTTG1161260.5340956358932725No Hit
ATCCGG1156090.5317178097065717No Hit
CGTTGC1151280.529505557490318No Hit
TGACCA1144900.5265712187918362No Hit
TCTTCA1138760.5237472627403191No Hit
CGAATT1137220.5230389740889615No Hit
GAGAAG1128590.5190697980751842No Hit
GCCAAT1126730.5182143325612067No Hit
CCGACT1125790.5177820005272611No Hit
GTTGGC1122700.5163608239475889No Hit
GAGCAC1121520.5158181092666785No Hit
ACAGCC1119620.5149442466448735No Hit
ATGGCC1117670.5140473876382842No Hit
TGCATA1116050.5133023047712715No Hit
TTCACA1112260.5115591788046184No Hit
CATGAG1111250.5110946518319748No Hit
ACCAGG1110910.5109382764154412No Hit
CAGTCC1107480.5093607244192355No Hit
TGTGTG1098500.5052305737119679No Hit
AACTAG1092120.502296235013486No Hit
GTGGTG1083170.49817988213708897No Hit
AAGAGG1079470.49647814966304776No Hit
TGACAC1065590.49009435324691475No Hit
GAACCG1064570.4896252269973142No Hit
CAAGGA1060280.48765213718281775No Hit
TCCAGA1056950.4861205779561807No Hit
AATGTA1047590.481815654724552No Hit
TTCCAT1046280.4812131494432023No Hit
ACGCTA1030520.47396468895917815No Hit
AGGTGT1030360.4738911005278682No Hit
ATTCGA1028050.4728286675508317No Hit
ACAAGT1023170.47058422039588005No Hit
AGGACT1022640.470340458717166No Hit
CTAGTT1019160.46873991033617585No Hit
GCGCAG1008700.46392906663929173No Hit
GCCTGG1001570.4606497821690448No Hit
CATACG997030.4585617104306266No Hit
CCGGAA988200.4545005488777121No Hit
CAGATC983420.45230209449232905No Hit
ACCGCT983190.45219631112232106No Hit
CGTCAG979190.4503566003395738No Hit
TAAGTC978400.4499932574599812No Hit
CTCGTC978250.4499242683056282No Hit
GACCAT977670.4496575102421299No Hit
GCTTCT973980.4479603770450455No Hit
GACCGA973060.4475372435650137No Hit
GCTGTC967230.4448558650991595No Hit
TGGCAT964080.44340709285774604No Hit
CCGCTC963710.44323691961034195No Hit
GACTAA962980.44290117239249055No Hit
TCCTCC962640.442744796975957No Hit
GCCATA962130.44251023385115673No Hit
ACAGTG957480.4403715700662131No Hit
ATGTGA953350.43847206868302646No Hit
CCTCGG952580.43811792435734764No Hit
TTAGTA932160.4287262008114228No Hit
CCACTT920720.4234646279727657No Hit
ATTGCT914180.4204567008429739No Hit
CGTGAA906690.4170118424022796No Hit
GCACAT902880.4152595178817129No Hit
CAGCCT901060.41442244947556284No Hit
TCGTGG898080.4130518649424162No Hit
GCGTAT887590.4082272234146614No Hit
GACTTG879370.4044466177561158No Hit
TATGGT865460.39804902350911214No Hit
GCGGCT862700.3967796230690166No Hit
AATCGG862000.3964576736820358No Hit
CAAGCT861420.3961909156185374No Hit
TGCGAC860120.39559300961414456No Hit
CACCTA846860.3894943683693374No Hit
TAGAGC845230.3887446862253679No Hit
CATTAA842650.38755807277049587No Hit
AGGCTT827680.38067295516606425No Hit
TTAGCG813460.3741327833333977No Hit
AACAAT807450.37136861788231995No Hit
GGTGGT805690.37055914513791116No Hit
AGTAGG802470.3690781779577996No Hit
TATTCT802420.36905518157301526No Hit
CTGGAG801270.36852626472297545No Hit
CTATGC796480.3663232110606356No Hit
ACCTGC795260.3657620992718977No Hit
GAGTGA786890.36191250445899903No Hit
CGACAA786840.36188950807421466No Hit
AGAACG770980.35459505482062176No Hit
TTCGTT762330.3506166802529308No Hit
ACGTAA753880.3467302912243772No Hit
CGTCTC751360.34557127343124644No Hit
AGTGCA739190.33997395337473785No Hit
CTCCGC731780.3365658891496986No Hit
AATTGC729770.3356414344813681No Hit
AAGGCG704940.3242214297974644No Hit
CGATGT692740.31861031191008526No Hit
TACAGT682700.3139926378453896No Hit
TCTCGC671430.3088092527149992No Hit
GAGTCG651970.2998590597569338No Hit
AGGTCA643630.2960232627749057No Hit
GGCAGG625600.2877307664216724No Hit
ATCCAC617520.2840145506405229No Hit
GGAGGC601490.27664190967866326No Hit
CGCTTG577090.2654196739039049No Hit
GGATTC571470.262834880254145No Hit
AGTTCC517900.23819655359620223No Hit
CCTGAC479660.22060891851313838No Hit
AGAGGT357080.16423098157584842No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)