FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836296

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836296
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences22623064
Sequences flagged as poor quality0
Sequence length6
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTACT3239851.4321004440424163No Hit
GGCTAC2912011.2871863864240494No Hit
CTTAGC2583521.1419850114025227No Hit
GTACTT2389311.0561389916060884No Hit
TCATGT2288811.0117153008098285No Hit
GGTAAT2132410.9425823133418179No Hit
CTGTTC2125530.939541169136064No Hit
CCGTCG2103040.9295999869867319No Hit
TGTGAT2082580.9205561191888065No Hit
GGCCGT2016160.8911967008536068No Hit
TAGCTT1962050.8672786321074811No Hit
CTTGTA1887030.8341177835150888No Hit
GCTCAA1840990.8137668708358867No Hit
CCTTAT1773540.7839521649233719No Hit
AAGCGC1740590.769387382717036No Hit
ATACCT1734700.7667838450176333No Hit
GTCGAG1733340.766182688604868No Hit
AGTTAG1722590.7614309007833775No Hit
GTCTGC1716650.7588052617452702No Hit
GATCAG1705160.7537263741109516No Hit
TTCTAC1693460.7485546608540735No Hit
CAGTAG1692810.7482673434509136No Hit
TCTCTG1682480.7437012068745418No Hit
CGAAGC1680340.7427552695779847No Hit
TTGAAT1664750.7358640721698883No Hit
ACTAAT1662260.7347634255023988No Hit
GGCGTT1654670.7314084422870394No Hit
CCATGA1603070.708599860743885No Hit
AGACGG1602090.7081666745052748No Hit
AACATA1595150.7050990086930753No Hit
GAATAC1577820.6974386846980586No Hit
CTGTAT1545370.6830949158787686No Hit
ACTTGA1537740.6797222515924456No Hit
GGCCAG1536860.6793332680312446No Hit
CTGAGG1528950.6758368362481757No Hit
ACTAGC1522450.6729636622165769No Hit
TATAAG1507240.6662404349826354No Hit
ATGCCG1481330.6547875212659081No Hit
GTAAGA1469250.649447837834875No Hit
TGCGGA1463070.6467161123709857No Hit
AGTCAA1445970.6391574545340101No Hit
AGCCTA1433910.6338266116384589No Hit
TTCTGT1429340.6318065492808578No Hit
TTAGGC1425880.630277136642499No Hit
CAACGG1420960.6281023649139658No Hit
ATTCAT1415630.6257463622080546No Hit
AACTCT1412840.6245131075083376No Hit
TGATAA1409450.6230146367441651No Hit
CCTGCT1381720.6107572342985901No Hit
CTACCG1379910.6099571658374834No Hit
GCATAA1379280.6096786889698053No Hit
GTCTCA1377130.6087283314055072No Hit
TACGGC1376330.6083747099862336No Hit
ATTGAA1373010.6069071810962476No Hit
CATAAC1370930.605987765406136No Hit
AACCTT1369360.6052937833708113No Hit
CCAGCG1364020.6029333603971593No Hit
AAGCAT1360220.6012536586556092No Hit
GTACGC1358320.6004138077848341No Hit
TACGAA1347480.5956222375536754No Hit
GACACG1337510.5912152306159767No Hit
TCGGAC1332580.5890360386197024No Hit
TCAATG1322840.584730697840045No Hit
TTACGT1287400.5690652689662197No Hit
TCAAGC1276510.5642515973963562No Hit
CTTCAC1275030.5635973977706998No Hit
GAGATA1269450.5611308883712658No Hit
AGATGC1257630.5559061319014966No Hit
ATCAGC1247670.5515035452315389No Hit
GTTACA1245130.5503807972253449No Hit
ACGAAC1240020.5481220404097341No Hit
TACTCG1229650.5435382227623986No Hit
CACATT1227950.5427867772464419No Hit
GGACTA1216810.5378625989830554No Hit
GATTCA1213400.5363552876834013No Hit
TAATGA1211540.5355331178835899No Hit
GTTGGC1205430.532832334293887No Hit
TGACCA1205370.5328058126874414No Hit
TCTTCA1202410.5314974134361287No Hit
GCCAAT1197080.5291414107302176No Hit
AAGTTG1195900.5286198191367889No Hit
CGTTGC1195200.5283104003949244No Hit
ATCCGG1187090.5247255632570371No Hit
ACCAGG1174480.5191516056357353No Hit
TTCACA1170710.5174851646974079No Hit
ATGGCC1170120.5172243689006936No Hit
GAGAAG1169990.5171669054200616No Hit
GAGCAC1169550.516972413639461No Hit
CATGAG1163100.5141213409465667No Hit
CAGTCC1159970.5127377971436584No Hit
CCGACT1159850.5126847539307673No Hit
CGAATT1159310.5124460594727576No Hit
ACAGCC1153710.5099707095378415No Hit
TGCATA1145110.5061692792806491No Hit
TGTGTG1132610.5006439446044975No Hit
AAGAGG1125440.4974746126342568No Hit
GAACCG1119860.4950081032348227No Hit
GTGGTG1119830.4949948424315999No Hit
CATACG1115500.49308086649978095No Hit
AACTAG1107920.4897303035521625No Hit
TCCAGA1105990.4888771918781647No Hit
TGACAC1105540.48867827982982326No Hit
TTCCAT1102350.4872682144204693No Hit
CAAGGA1097640.4851862683144953No Hit
ACGCTA1085410.4797802808673484No Hit
AGGTGT1080370.47755246592592404No Hit
CTAGTT1070860.47334879130430785No Hit
ACAAGT1068030.47209785553362704No Hit
AATGTA1063420.4700601121050623No Hit
GCGCAG1061520.4692202612342873No Hit
ATTCGA1061230.4690920734698006No Hit
CCGGAA1047670.4630981904131111No Hit
AGGACT1038350.4589785008785724No Hit
GCCTGG1036310.45807676625942445No Hit
GACCAT1035530.4577319853756326No Hit
CGTCAG1032320.4563130794307968No Hit
CCGCTC1031210.4558224297115545No Hit
CTCGTC1029900.4552433746374938No Hit
TGGCAT1027950.45438142242801416No Hit
GACTAA1025150.45314374746055613No Hit
GCTGTC1023380.45236136007041305No Hit
TCCTCC1022340.4519016522253573No Hit
CAGATC1021840.4516806388383112No Hit
ACCGCT1017460.4497445615677876No Hit
GCCATA1013130.44783058563596867No Hit
GACCGA1010140.4465089255814332No Hit
ATGTGA1004280.44391864868525327No Hit
ACAGTG1003800.443706475833689No Hit
GCTTCT1002870.44329539093378334No Hit
TAAGTC1000140.44208865784051177No Hit
TTAGTA977120.4319132015009107No Hit
CCTCGG974470.43074183054956655No Hit
CGTGAA955230.42223723541603386No Hit
TCGTGG952140.42087137268408914No Hit
GCACAT947370.4187629049716696No Hit
ATTGCT947310.41873638336522406No Hit
CAGCCT946790.4185065294426962No Hit
GCGGCT945420.4179009527621899No Hit
CCACTT942480.41660139404635904No Hit
GCGTAT937070.4142100291985206No Hit
GACTTG929360.4108020027702702No Hit
TGCGAC920500.4068856455518139No Hit
CAAGCT908430.4015503823885217No Hit
TATGGT889690.39326680064203506No Hit
AGGCTT888240.39262586181960146No Hit
CACCTA885960.3916180407746714No Hit
AATCGG885530.3914279692618118No Hit
TAGAGC872350.38560205637927736No Hit
CATTAA868880.38406822347317765No Hit
ACCTGC848840.37521000692037115No Hit
TTAGCG838790.3707676378407452No Hit
GGTGGT834910.36905257395726765No Hit
CGACAA831650.3676115666737273No Hit
TATTCT831600.3675894653350227No Hit
AACAAT829390.36661258616427905No Hit
CTATGC819160.3620906522653165No Hit
CTGGAG818630.36185637807504767No Hit
AGTAGG813480.35957994018847317No Hit
GAGTGA812300.3590583485950444No Hit
AGAACG809970.35802842621140973No Hit
CGTCTC805460.3560348854602542No Hit
AGTGCA780690.3450858822659919No Hit
TTCGTT780510.34500631744665533No Hit
CTCCGC779450.34453776906611766No Hit
ACGTAA779250.34444936371129925No Hit
AATTGC760770.33628070892607653No Hit
AAGGCG741720.32786009887962125No Hit
CGATGT731830.32348845408385No Hit
TCTCGC713630.31544356679537305No Hit
TACAGT697490.308309254661526No Hit
AGGTCA676190.2988940843733634No Hit
GGAGGC670160.2962286629255878No Hit
GAGTCG669470.29592366445146423No Hit
GGCAGG650460.2875207354759727No Hit
ATCCAC636940.28154453349024694No Hit
CGCTTG600330.26536193329073376No Hit
GGATTC591860.2616179665141733No Hit
AGTTCC538320.2379518530292802No Hit
CCTGAC497300.21981991475602067No Hit
AGAGGT377210.1667369194552957No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)