FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836318

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836318
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25235155
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGGCC3338991.3231501847323703No Hit
GGTACC3053921.2101847601094584No Hit
GCCAAT2588691.025826867320609No Hit
AAGCGC2214890.8777001765988757No Hit
CGCTTG2098970.8317642590267427No Hit
CGTACT2086350.8267632990564155No Hit
GCACAT2063820.8178352778098648No Hit
ACAGTG2048930.8119347790810083No Hit
TGACCA1972970.7818339138396416No Hit
CATACG1962930.7778553371279074No Hit
GATCAG1904750.754800198374054No Hit
GTCTCA1879830.7449250856592717No Hit
AACTAG1873140.7422740220933852No Hit
TTAGGC1828910.7247468858423893No Hit
TAGAGC1807250.7161636217411781No Hit
CGATGT1775690.7036572590895519No Hit
AGTTCC1769310.7011290400237288No Hit
GCTGTC1729600.685393055838175No Hit
ACTAGC1727590.6845965479506664No Hit
CAAGGA1717410.6805624930776134No Hit
GCCATA1705800.6759617684139447No Hit
GCATAA1705470.6758309984622642No Hit
ACTTGA1702080.6744876344131827No Hit
CCTGCT1684980.6677113732806476No Hit
TCTTCA1676830.66448175174672No Hit
TGTGAT1667510.6607884912931979No Hit
CCTTAT1663280.6591122582762023No Hit
CTATTA1660270.6579194778078439No Hit
GGACTA1657790.6569367218073359No Hit
TATAAG1654070.6554625878065737No Hit
CGAATT1647020.6526688661115813No Hit
AGGTGT1636940.6486744384966132No Hit
CAGGAC1619090.6416009729284405No Hit
GACTAA1616240.640471596073018No Hit
AGTTAG1546460.6128196953813044No Hit
ATGTGA1533460.6076681518302542No Hit
ATTCAT1533100.6075254937011483No Hit
TACGGC1526110.6047555483610068No Hit
ACTAAT1523830.6038520468766686No Hit
CTTAGC1518320.6016685849561851No Hit
GTAAGA1494210.5921144530318915No Hit
ATTGCT1489220.5901370528534499No Hit
TCTCTG1488130.5897051157403234No Hit
GAACCG1486510.5890631541593464No Hit
CTTCAC1482440.5874503247552868No Hit
GAGCAC1463590.5799805866062642No Hit
TATTCT1456170.5770402440563571No Hit
GAAGAT1434580.5684847190358053No Hit
TGCGAC1414850.5606662610156348No Hit
GTCTGC1410520.5589504007405541No Hit
TACTCG1404840.5566995724813262No Hit
CGTCAG1403600.5562081944810722No Hit
CATAAC1400260.5548846440610331No Hit
TGATAA1394230.5524951203985076No Hit
CTGGAG1391890.5515678425593186No Hit
AAGCAT1387010.5496340323647705No Hit
GAATAC1384700.548718642703007No Hit
CGTCTC1383290.5481598983640085No Hit
CAGATC1379560.546681801637438No Hit
TTAGTA1374870.5448232832332514No Hit
GTTACA1370480.5430836466033199No Hit
AGTAGG1362230.5398143978113072No Hit
TAAGTC1355420.5371157815357187No Hit
GACCGA1353130.5362083173255723No Hit
CGAAGC1351540.5355782439220207No Hit
ATCAGC1345420.5331530557272186No Hit
ACAGCC1335870.5293686525801011No Hit
CATGAG1334740.5289208645637405No Hit
ACCTGC1313920.5206704694304434No Hit
AATGTA1308190.5183998275421728No Hit
GCGTAT1307480.5181184740097693No Hit
ATTCGA1299550.5149760324436288No Hit
TAGCTT1294930.5131452531201017No Hit
TTCCAT1291630.5118375536032966No Hit
CCGCTC1291620.5118335908774881No Hit
AACATA1287870.5103475686993006No Hit
AGTGCA1287710.5102841650863646No Hit
TGGCAT1287640.5102564260057051No Hit
TTGAAT1287180.5100741406185142No Hit
TCAAGC1286920.5099711097474932No Hit
CTGTAT1281270.5077321696656906No Hit
CGTGAA1273480.504645206260869No Hit
GGTAAT1266570.5019069627271954No Hit
AGTCAA1265700.5015622055818559No Hit
ACGCTA1264200.5009677967105809No Hit
AAGTTG1263890.5008449522105174No Hit
TTCTGT1247810.4944728891104493No Hit
CTCCGC1239460.4911640130603517No Hit
TGTGTG1238550.49080340501177816No Hit
CTACCG1233830.48893299843016613No Hit
ATTGAA1233450.4887824148494432No Hit
GCGCAG1229690.48729242994544714No Hit
TATGGT1229300.4871378836389157No Hit
AGAGGT1226540.4860441713157696No Hit
AATCGG1223020.48464929183117755No Hit
TCGGAC1221760.48414998837930656No Hit
ATCCAC1218330.48279077342699106No Hit
TCCAGA1216810.4821884391040991No Hit
TTCTAC1215810.48179216652324897No Hit
ATACCT1214440.4812492730874845No Hit
CACCTA1210610.479731549102829No Hit
AGATGC1210420.4796562573124674No Hit
CCTGAC1199010.4751347871649689No Hit
GATCCT1195060.47356951047061135No Hit
GCTCAA1192620.4726026053733373No Hit
GGCAGG1190640.4718179856632543No Hit
GAGATA1190320.4716911784373823No Hit
CAAGCT1181340.4681326506613492No Hit
CACATT1171670.4643006948045297No Hit
GAGTGA1169040.46325849791689405No Hit
TAATGA1164990.46165359396445155No Hit
GAGAAG1162840.4608016079156241No Hit
TCTCGC1159540.4594939083988191No Hit
AACCTT1155570.45792070625284453No Hit
TGCATA1148780.45523001542887287No Hit
AAGAGG1142520.4527493490727519No Hit
CGTTGC1142310.45266613183077337No Hit
GCTTCT1139980.45174281671739286No Hit
TTACGT1130110.4478316063444033No Hit
AAGGCG1129140.44744722194097875No Hit
CGACAA1125370.44595327431117426No Hit
ATCCGG1125040.4458225043594937No Hit
CGAGAG1123180.44508543735911277No Hit
ACACGA1121020.4442294885844767No Hit
TTCGTT1120290.4439402096004562No Hit
CTGTTC1115290.4419588466962061No Hit
GGATTC1108770.43937514946906414No Hit
TTCACA1107240.4387688524203636No Hit
TGCGGA1106880.4386261942912576No Hit
ACCGCT1098410.435269765531458No Hit
CATTAA1082840.42909980144762333No Hit
GGCGTT1082700.4290443232863044No Hit
TTAGCG1082420.4289333669636664No Hit
CTCGTC1082050.4287867461087519No Hit
TACAGT1081910.4287312679474329No Hit
AATTGC1078340.4273165748337983No Hit
TCGTGG1070410.42417413326765774No Hit
TACGAA1066760.4227277383475552No Hit
GAGCCA1066430.4225969683958747No Hit
CTAGTT1064460.4218163114116002No Hit
GACTTG1063720.4215230697017712No Hit
ACGAAC1060690.4203223637817957No Hit
TCCTCC1058470.41944263865230863No Hit
CGAGCC1054820.4179962437322061No Hit
CAGCCT1051230.4165736251669546No Hit
GGATCG1049000.4156899373116591No Hit
ATGCCG1039830.41205611774526446No Hit
AGGTCA1038750.4116281433579465No Hit
CCGGAA1036400.41069690279294896No Hit
TCATGT1032240.4090484088566129No Hit
CTATGC1027550.4071898904524264No Hit
AACTCT1026230.40666681064570437No Hit
ACCAGG1024730.4060724017744294No Hit
CCATGA1024080.4058148245968769No Hit
CAGTAG1022710.4052719311611124No Hit
GACACG1021470.4047805531608583No Hit
TGACAC1019170.4038691262249033No Hit
AGCCTA1019140.4038572380474778No Hit
GACCAT1012020.40103577727182577No Hit
CAGTCC1009520.4000450958197007No Hit
GTACGC1009470.4000252821906582No Hit
TATTGG1003760.3977625657540047No Hit
AGGACT999790.39618936360803014No Hit
GATTCA997380.3952343466881816No Hit
GGAGGC977190.38723360328081996No Hit
AGGCTT973780.38588231378012144No Hit
CCAGCG966350.38293800850440585No Hit
TCCACG963390.38176504166508984No Hit
AGAACG958230.3797202751479038No Hit
TCAATG956560.37905849993788426No Hit
CCGACT950670.37672445443667774No Hit
GGCCAG941600.37313026212836814No Hit
CCTCGG938060.3717274571921591No Hit
CCACTT924870.3665006218507475No Hit
GTGGTG919960.364554923478774No Hit
GAGTCG917950.3637584155912654No Hit
GCCTGG914950.3625695978487154No Hit
CTGAGG911790.3613173764932294No Hit
ACGTAA905060.35865046202410883No Hit
CAACGG899850.35658588187788026No Hit
GTCGAG898550.35607072752277524No Hit
AACAAT889520.35249238611769973No Hit
GGTGGT884580.35053479956830064No Hit
CCGTCG869310.344483717258721No Hit
GGCCGT822730.32602534044272763No Hit
GTACTT761710.3018447875592601No Hit
GCGGCT750930.297572969137697No Hit
GTTGGC714780.2832477153399692No Hit
AGACGG467080.18509099706342202No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)