FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836324

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836324
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27261124
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTATTA2991421.09732085881712No Hit
GCATAA2885291.058389962204053No Hit
ACCAGG2851021.045818947157131No Hit
AATCGG2440190.8951171639144446No Hit
TGACCA2338590.8578479742801508No Hit
AGACGG2317580.8501410286677835No Hit
GACTAA2316650.849799883526446No Hit
TATAAG2270780.8329737247811206No Hit
GATCAG2195300.8052859449228872No Hit
GCCAAT2135590.7833829595580871No Hit
GGACTA2115780.7761162012248651No Hit
TATTCT2098720.7698582054063507No Hit
ACCGCT2087270.7656580851178404No Hit
TCTCTG2057470.7547267676857344No Hit
CGTACT2042800.7493454781981843No Hit
TTAGCG2034420.7462715036988203No Hit
TGGCAT2012970.7384031560840999No Hit
TATTGG1979370.7260779122680342No Hit
GGTAAT1976610.7250654815260001No Hit
CGATGT1967250.7216320207486676No Hit
GAACCG1961970.7196951967204287No Hit
GAGCCA1918710.7038264453072441No Hit
GGCGTT1891200.6937351519328404No Hit
TACGGC1890960.6936471144770113No Hit
AACTCT1886080.6918570195418208No Hit
CGAGAG1883650.6909656403015518No Hit
ACAGTG1874380.6875651935701551No Hit
CTTAGC1863920.6837282277869393No Hit
GATCCT1857540.6813878987528174No Hit
CAGATC1850540.6788201396244703No Hit
ACTTGA1849990.6786183871215288No Hit
GGCTAC1844970.6767769370037714No Hit
AGTCAA1811930.6646571139179734No Hit
TACTCG1786360.6552774566448544No Hit
CCTGAC1785950.6551270593244798No Hit
TAGCTT1755490.643953638888844No Hit
CGTCTC1753640.6432750168334952No Hit
AACATA1747300.640949360708678No Hit
AGCCTA1728420.6340237475167935No Hit
GTTACA1712090.6280335322930926No Hit
CTTCAC1711120.6276777142424502No Hit
AGTAGG1708620.6267606574108977No Hit
ATCCAC1708250.6266249329998278No Hit
AGTTCC1706280.6259022922165646No Hit
GCTGTC1700370.6237343698667743No Hit
TCCTCC1694080.6214270548785883No Hit
GGATCG1692130.6207117505499773No Hit
TATGGT1686410.6186135245193852No Hit
GGATTC1671390.6131038470754178No Hit
TGTGTG1657930.608166413094339No Hit
GAATAC1642650.6025613617398901No Hit
CATAAC1640300.6016993283182307No Hit
CGAATT1610630.5908156978413656No Hit
CCTTAT1595940.5854270718991631No Hit
GTCTCA1584600.5812673021112409No Hit
AGTGCA1577360.5786115055270649No Hit
ATCAGC1568630.5754091430712834No Hit
TCAATG1564130.5737584407744889No Hit
GGTGGT1551800.569235516481272No Hit
CAAGCT1541180.565339859060837No Hit
TTAGGC1540970.5652628262869865No Hit
GGAGGC1535750.563348011622705No Hit
ACGTAA1528580.5607178926298123No Hit
CCGACT1527470.560310719396603No Hit
TAGAGC1520270.5576695957217318No Hit
GAAGAT1516810.5564003890668632No Hit
ACGCTA1514870.5556887529655784No Hit
CTCCGC1503610.5515583289962659No Hit
GACACG1498930.5498415986075995No Hit
GTAAGA1496310.5488805230481326No Hit
TCTCGC1493700.5479231157159917No Hit
ATTGCT1491240.5470207317937441No Hit
AACTAG1490660.5468079746088239No Hit
ATGGCC1461890.5362544845913176No Hit
CTGTTC1442560.5291638011697537No Hit
ACTAAT1435070.5264162989024224No Hit
TTCTAC1406770.516035215569248No Hit
AAGCAT1406340.5158774817942209No Hit
GGTACC1405270.5154849814703165No Hit
CATGAG1403710.5149127380074278No Hit
GCGTAT1402260.5143808450451273No Hit
TTCCAT1398240.5129062176599909No Hit
TAAGTC1395390.511860772872021No Hit
GTACTT1384830.5079871248155432No Hit
GCGCAG1381060.506604203113562No Hit
GTACGC1368470.5019859049098635No Hit
TGCGGA1366290.5011862313527498No Hit
AGGTGT1365510.5009001096213054No Hit
GATTCA1348960.4948291933964278No Hit
CACCTA1346400.49389012720091807No Hit
GGCAGG1335560.4899137687793064No Hit
TTCACA1335190.4897780443682366No Hit
AGGCTT1324700.4859300739030423No Hit
TCCAGA1321070.48459850738362803No Hit
CAACGG1319240.4839272217829317No Hit
TCGGAC1316400.48288544522228793No Hit
AATTGC1315800.4826653515827154No Hit
TACAGT1315370.4825076178076883No Hit
ACAGCC1314400.4821517997570459No Hit
TACGAA1301520.47742712296088746No Hit
GGCCGT1301080.47726572095853415No Hit
AGAGGT1297740.47604053303158006No Hit
TTACGT1291710.47382859195387544No Hit
TAATGA1289620.4730619324426975No Hit
CCGCTC1281780.4701860422189489No Hit
ATGCCG1269270.4655970898338601No Hit
TGCGAC1266440.4645589815005427No Hit
CAGTAG1265010.46403442499289466No Hit
CCTGCT1263880.4636199153050329No Hit
GACCGA1257750.4613712919540661No Hit
TCTTCA1252830.45956652410957083No Hit
GCGGCT1246910.4573949335324545No Hit
GAGATA1246290.4571675034382295No Hit
GTGGTG1241460.45539574963967006No Hit
TCAAGC1233920.4526299062357077No Hit
ATTCGA1233060.45231443868565363No Hit
GCCATA1231730.4518265644512676No Hit
TTCTGT1223530.4488186180437755No Hit
AAGCGC1215970.4460454381851607No Hit
CGACAA1214230.4454071666304001No Hit
GCACAT1209680.44373812319697453No Hit
TGACAC1207560.442960459003818No Hit
CAAGGA1199100.4398571386858443No Hit
ATACCT1197020.43909414740199265No Hit
ATTCAT1196420.43887405376242006No Hit
CGAGCC1189510.436339308680009No Hit
GAGTGA1172030.42992724731379384No Hit
TGTGAT1171790.42983920985796475No Hit
GACCAT1162320.42636539858004385No Hit
TTGAAT1159580.4253603042926623No Hit
GCTTCT1150540.42204422678976844No Hit
CATTAA1148580.42132525423383127No Hit
CCTCGG1141390.4186877987862863No Hit
ATGTGA1138360.41757632590644467No Hit
CCAGCG1131850.41518830991708194No Hit
GGCCAG1124730.4125765320608204No Hit
ATCCGG1121620.4114357133623691No Hit
CCATGA1120970.4111972785861654No Hit
AGTTAG1110370.40730895762038277No Hit
AGGTCA1108190.406509284063269No Hit
GAGTCG1107870.4063919007888303No Hit
ACTAGC1107020.4060801014661024No Hit
CAGGAC1105360.40547117572995156No Hit
TCGTGG1104690.40522540449909544No Hit
GAGCAC1099170.40320054301502756No Hit
GTTGGC1098510.40295844001149767No Hit
AGATGC1083460.3974377578855516No Hit
GAGAAG1077180.39513411112469166No Hit
CTAGTT1074270.3940666569727646No Hit
ACCTGC1072070.39325964696099835No Hit
CGCTTG1071270.3929661887749016No Hit
CCACTT1071010.39287081486442016No Hit
TGATAA1066280.3911357433391228No Hit
AAGGCG1065670.39091198147222395No Hit
CTACCG1059400.3886120029386903No Hit
CTATGC1043790.3828859000824764No Hit
CCGTCG1035640.37989629481161524No Hit
AAGTTG1033450.3790929530271753No Hit
AATGTA1032460.3787297985218805No Hit
CTGGAG1028550.3772955216373324No Hit
CACATT1023620.3754870855655108No Hit
ATTGAA992550.36408990326297624No Hit
CGTGAA987170.36211639696147524No Hit
TTAGTA985870.36163952740906796No Hit
CAGCCT984580.36116632608398686No Hit
ACACGA968890.35541087740916333No Hit
AGGACT967960.3550697322678258No Hit
CTCGTC966540.35454884398750397No Hit
GCTCAA960460.3523185617731682No Hit
CAGTCC950470.3486540026742845No Hit
AGAACG941690.34543329908187204No Hit
TCCACG937460.3438816389228852No Hit
GTCTGC933750.34252072658486127No Hit
CTGTAT927140.34009602832223645No Hit
GTCGAG919260.33720546518918293No Hit
TTCGTT916670.33625539431169454No Hit
GACTTG894230.32802389219167927No Hit
CTGAGG885230.32472248759809025No Hit
CCGGAA870080.319165123198882No Hit
AAGAGG864110.3169751914851347No Hit
TGCATA863170.3166303781164709No Hit
AACCTT852260.31262834210357576No Hit
CGAAGC817070.2997198501426427No Hit
TCATGT816900.2996574902780971No Hit
GCCTGG811640.2977280027045106No Hit
CGTTGC788790.28934610326412075No Hit
ACGAAC782960.2872075267329403No Hit
CATACG702240.25759759575577296No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)