FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836328

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836328
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26496791
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCGG4886801.844298805844074No Hit
TGTGTG4375571.6513584607283198No Hit
CATAAC4102001.5481119959016925No Hit
GCATAA4041071.5251167584784135No Hit
CTATTA3652261.3783782345567808No Hit
TCTCTG3529881.3321915095303427No Hit
CGTCTC3356081.2665986609472821No Hit
TATAAG3077281.1613783721960895No Hit
CGCTTG2799351.0564864250920045No Hit
GACTAA2252250.8500085916064326No Hit
ACCGCT2176450.821401353846962No Hit
CTACCG2141000.8080223752378166No Hit
CAAGCT2119650.799964795736963No Hit
AGGTGT2056510.776135495049193No Hit
CGTACT2026700.7648850760833642No Hit
TGGCAT2022020.7631188244644417No Hit
CTCCGC1957550.7387875762012086No Hit
TACTCG1956800.7385045230571506No Hit
GTCTCA1893570.7146412559920936No Hit
GGTAAT1892720.7143204624288276No Hit
TCTCGC1848900.6977826107319939No Hit
AACTCT1812850.6841771896076019No Hit
ACCTGC1804340.6809654799330228No Hit
GGCTAC1791360.6760667735198576No Hit
GACCGA1752350.6613442359869163No Hit
GATCCT1735070.654822691547818No Hit
TTAGCG1729250.6526261991499273No Hit
CACCTA1714800.6471727085744081No Hit
AGACGG1702380.6424853485088062No Hit
AGAGGT1681970.6347825289485055No Hit
TGACCA1679750.6339446916420935No Hit
CGTCAG1652940.6238264852524972No Hit
TTCACA1629990.6151650590443197No Hit
CAAGGA1601670.6044769723246864No Hit
AGATGC1599490.6036542311859576No Hit
TGCGAC1594120.6016275706745017No Hit
TATGGT1580190.5963703302788628No Hit
CATTAA1572350.5934114814129756No Hit
GCCAAT1552740.5860105852063369No Hit
GGATCG1549800.5849010168816292No Hit
AGTAGG1534670.5791908914554974No Hit
CTTCAC1526920.5762660089668972No Hit
TATTCT1523730.57506208959417No Hit
CGATGT1511180.5703256669835981No Hit
GGATTC1510830.5701935755163711No Hit
GCTCAA1492360.5632229200887006No Hit
GATTCA1489400.5621058036801513No Hit
ACGCTA1486600.5610490719423344No Hit
TAGAGC1471640.5554031052288558No Hit
ACCAGG1461240.5514781016312503No Hit
TGACAC1459440.5507987740855109No Hit
TTCCAT1458010.5502590860908402No Hit
GGAGGC1456150.5495571142935761No Hit
GCGCAG1455220.5492061283949442No Hit
GAACCG1430150.5397446052995626No Hit
CTATGC1426590.5384010463757668No Hit
CCTGCT1426140.538231214489332No Hit
AGGCTT1417590.5350044086470698No Hit
TTAGGC1406390.5307774816958023No Hit
TGATAA1402960.5294829853169767No Hit
CCTGAC1398280.5277167336980543No Hit
CTTAGC1392740.5256259144739451No Hit
TTCTGT1392670.5255994961804997No Hit
CGAGAG1388630.5240747832445068No Hit
CCTTAT1388020.5238445666873396No Hit
ATCAGC1386690.5233426191118766No Hit
TTACGT1384240.5224179788412868No Hit
TCTTCA1377730.5199610775508626No Hit
GAATAC1376380.5194515818915582No Hit
CAGATC1362210.5141037644898208No Hit
GACCAT1361330.5137716488007925No Hit
ATGTGA1356110.5118015989181482No Hit
GTTACA1355630.5116204449059512No Hit
GTACTT1354990.5113789062230214No Hit
AGTTCC1352210.5103297225690462No Hit
ATCCAC1348090.5087748172976871No Hit
GGCGTT1337330.5047139481909337No Hit
AATTGC1337030.5046007269333105No Hit
TAAGTC1336340.5043403180407772No Hit
TATTGG1332460.5028759897755166No Hit
ATTGCT1323210.4993850009988002No Hit
AGTCAA1322660.49917742869315757No Hit
CTAGTT1322150.49898495255519804No Hit
ACTAAT1322130.4989774044713565No Hit
TCAATG1320420.4983320433029041No Hit
AAGTTG1317430.49720360476859254No Hit
GTACGC1307190.4933389858417195No Hit
GGTACC1288300.4862098206533765No Hit
ACAGTG1288110.48613811385688177No Hit
TAGCTT1286440.4855078488561124No Hit
CCAGCG1284610.4848171991846107No Hit
GGTGGT1280410.48323210157788543No Hit
TACAGT1275490.4813752729528643No Hit
TTCGTT1266980.47816356327828535No Hit
ATTCAT1264650.4772842115107448No Hit
GCACAT1254170.4733290155777732No Hit
GAGAAG1246240.470336200334599No Hit
GAGCCA1246230.4703324262926782No Hit
GGCAGG1244620.46972480554343354No Hit
AGTTAG1239020.46761134206779986No Hit
AGGTCA1238860.4675509573970674No Hit
AAGGCG1234640.46595831170650065No Hit
TAATGA1234470.4658941529938475No Hit
TCGGAC1233870.46566771047860095No Hit
AAGCAT1231100.4646223008665465No Hit
ACTTGA1224320.46206350044426137No Hit
AGTGCA1214300.45828191043964533No Hit
GATCAG1213780.458085660259765No Hit
AACAAT1198580.45234911654018783No Hit
TACGGC1185320.44734473695324084No Hit
TCCTCC1177950.4445632680576301No Hit
TCCAGA1170370.441702544281683No Hit
GAGTGA1156690.4365396549340635No Hit
CGAGCC1143340.4315013089698296No Hit
CTCGTC1137320.42922933573352334No Hit
TCGTGG1134890.42831224354677516No Hit
ACGTAA1128750.42599498180741957No Hit
TTGAAT1122110.4234890179720253No Hit
AGAACG1116040.42119817452611524No Hit
AATGTA1114880.4207603856633054No Hit
ATCCGG1111380.4194394709910344No Hit
ATTCGA1111180.4193639901526189No Hit
TACGAA1107580.41800533506114007No Hit
TTCTAC1101360.41565788098641826No Hit
GTCGAG1101200.415597496315686No Hit
GAAGAT1098810.4146955002966208No Hit
GTCTGC1086290.4099703998118112No Hit
GCCATA1076840.4064039301966793No Hit
TGCGGA1059850.39999183297328345No Hit
CGAATT1057650.39916154375071305No Hit
GGCCAG1057520.39911248120574294No Hit
CCGCTC1050710.39654235865769555No Hit
GCCTGG1048210.39559884817750196No Hit
CCGTCG1045990.39476101087109006No Hit
ATTGAA1045540.3945911789846552No Hit
ATACCT1030570.38894143822925575No Hit
CAGTCC1029990.3887225437978508No Hit
CAGTAG1023170.38614864720788267No Hit
CTGTAT1015550.3832728272642525No Hit
ACACGA1001050.3778004664791295No Hit
AACCTT994430.3753020507275768No Hit
GCGTAT993330.3748869061162916No Hit
AGCCTA983490.3711732488662495No Hit
ACTAGC977010.3687276697015876No Hit
CAACGG967390.3650970413738026No Hit
CGTGAA966020.3645799976306565No Hit
GGCCGT946190.3570960725017607No Hit
GCTGTC942960.3558770569613505No Hit
TTAGTA940150.35481655118161287No Hit
TCAAGC936750.3535333769285496No Hit
CCATGA934040.35251061156801966No Hit
CAGGAC930840.35130291815337183No Hit
CCGACT927130.34990274860076453No Hit
CGACAA926180.34954421461829094No Hit
CAGCCT923370.3484837088385533No Hit
ATGCCG911700.3440794019170095No Hit
GTGGTG907770.34259620344214514No Hit
CCGGAA905530.3417508180518916No Hit
AACATA895590.3379994203826418No Hit
CTGTTC895130.33782581445428617No Hit
AAGCGC891070.3362935534344518No Hit
ATGGCC857580.323654287041778No Hit
AACTAG850540.32099736152955277No Hit
CCTCGG824700.3112452372062715No Hit
GAGCAC824080.3110112466071835No Hit
ACAGCC823350.3107357415469669No Hit
TGCATA815760.30787124372909913No Hit
ACGAAC812320.3065729733083527No Hit
GTAAGA809800.30562191474431755No Hit
CATACG782780.2954244534743849No Hit
CGAAGC782500.29531878030060316No Hit
GCTTCT776920.29321286490881104No Hit
TGTGAT773450.2919032723623023No Hit
GACTTG761260.2873027152608782No Hit
AAGAGG758460.28624598352306135No Hit
GAGTCG753290.2842948038500209No Hit
CCACTT751890.2837664379811125No Hit
CACATT750620.28328713465717414No Hit
GGACTA750530.28325316827988717No Hit
CGTTGC738800.2788262171068187No Hit
AGGACT727690.27463325653283827No Hit
GACACG725950.2739765732386235No Hit
TCCACG711600.26856082308231216No Hit
CTGGAG691120.260831585228566No Hit
TCATGT672570.2538307374655293No Hit
CATGAG669400.2526343661766438No Hit
CTGAGG664830.2509096290188499No Hit
GAGATA661270.24956607009505413No Hit
GCGGCT642340.24242180873902805No Hit
GTTGGC603870.22790306946980865No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)