FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23459470
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[OK]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATCGG4388911.8708478921305554No Hit
TGTGTG3723681.5872822361289494No Hit
CATAAC3705691.5796136911873968No Hit
GCATAA3627851.546433060934454No Hit
CTATTA3299781.4065876168557943No Hit
TCTCTG3030051.2916105947832581No Hit
CGTCTC2989561.2743510403261455No Hit
TATAAG2756271.1749071909979212No Hit
CGCTTG2408871.026822004077671No Hit
ACCGCT1965270.837729923139781No Hit
GACTAA1945430.8292727840825048No Hit
CAAGCT1921620.8191233646795942No Hit
CTACCG1915200.8163867299644877No Hit
AGGTGT1834850.7821361693166982No Hit
CGTACT1816420.7742800668557304No Hit
CTCCGC1758220.7494713222421479No Hit
TACTCG1751130.7464490885770224No Hit
TGGCAT1743730.743294712114127No Hit
GTCTCA1700310.7247861950845437No Hit
GGTAAT1679550.7159368903048534No Hit
TCTCGC1664550.7095428839611466No Hit
ACCTGC1630360.6949688121683908No Hit
AACTCT1626480.6933148958608187No Hit
GATCCT1567310.6680926721703432No Hit
TTAGCG1554740.6627344948543168No Hit
CACCTA1553250.662099356890842No Hit
GGCTAC1546580.6592561554033403No Hit
AGAGGT1519960.6479089254787086No Hit
GACCGA1512980.644933581193437No Hit
AGACGG1474160.6283858927759237No Hit
TTCACA1471010.6270431514437453No Hit
TGACCA1458950.621902370343405No Hit
CAAGGA1453270.6194811732745881No Hit
AGATGC1441690.6145450003772464No Hit
TATGGT1430630.6098304863664865No Hit
TGCGAC1428170.6087818693261187No Hit
CGTCAG1422340.6062967321938646No Hit
GGATCG1382330.5892417859397506No Hit
CTTCAC1379080.5878564178986141No Hit
AGTAGG1378300.5875239295687413No Hit
TATTCT1375890.5864966258828525No Hit
CATTAA1363860.5813686327951996No Hit
GGATTC1354130.5772210540135817No Hit
GCCAAT1341800.5719651807990547No Hit
GCTCAA1339980.5711893746960183No Hit
TGACAC1325540.5650340779224765No Hit
TAGAGC1321210.5631883414245932No Hit
CGATGT1303940.5558267087875387No Hit
GCGCAG1297830.5532222168702021No Hit
CCTGCT1292880.5511121947767789No Hit
GATTCA1288760.5493559743677073No Hit
AGGCTT1280200.5457071280808987No Hit
ACGCTA1278890.5451487181935483No Hit
CCTGAC1271760.5421094338448397No Hit
ACCAGG1259570.536913238022854No Hit
ATCAGC1258650.5365210723004399No Hit
TTCCAT1258090.5362823627302749No Hit
TGATAA1255130.5350206121451166No Hit
TTCTGT1251410.5334348985718774No Hit
CTTAGC1249350.5325567883673417No Hit
CGAGAG1248130.5320367425180536No Hit
GGAGGC1247040.5315721113904108No Hit
CTATGC1240860.5289377807768036No Hit
TCTTCA1230820.5246580591974158No Hit
GAACCG1229540.5241124373227528No Hit
ATCCAC1225750.5224968850532429No Hit
AGTTCC1225560.5224158943062226No Hit
GACCAT1222870.5212692358352511No Hit
GTTACA1221490.5206809872516301No Hit
GTACTT1214730.5177994217260663No Hit
ATGTGA1212430.5168190074200312No Hit
TTAGGC1204690.5135197001466785No Hit
CCTTAT1202800.5127140553473715No Hit
GAATAC1197260.5103525356710957No Hit
AGTCAA1194840.509320969314311No Hit
ACTAAT1189510.5070489657268472No Hit
TATTGG1186300.5056806483692939No Hit
CTAGTT1185300.5052543812797134No Hit
TTACGT1180760.5033191286930182No Hit
CAGATC1171700.4994571488614193No Hit
TACAGT1159790.49438030782451603No Hit
AATTGC1157040.49320807332816985No Hit
GGCGTT1155830.49269229014977745No Hit
GGTACC1154690.49220634566765575No Hit
TAAGTC1154650.4921892949840725No Hit
CCAGCG1151310.4907655629048738No Hit
ATTGCT1142220.48689079506058747No Hit
GTACGC1134290.4835104970402145No Hit
ATTCAT1132440.4827219029244907No Hit
AAGTTG1130340.4818267420363716No Hit
GAGCCA1128490.4810381479206478No Hit
GCACAT1128310.48096141984452334No Hit
TCAATG1122200.47835692792718676No Hit
GGCAGG1119620.4772571588360692No Hit
ACAGTG1116240.47581637607328725No Hit
AGGTCA1112520.4742306625000479No Hit
TAGCTT1104210.47068838298563437No Hit
GGTGGT1098800.46838227803100413No Hit
TTCGTT1094160.4664043987353508No Hit
TAATGA1069010.45568378143240235No Hit
TCGGAC1068800.4555942653435905No Hit
GAGAAG1068160.455321454406259No Hit
AAGCAT1066350.4545499109741184No Hit
ACTTGA1063380.4532838977180644No Hit
TACGGC1062550.4529300960337126No Hit
AGTGCA1051290.4481303286050367No Hit
GATCAG1051240.4481090152505577No Hit
AAGGCG1050880.4479555590983087No Hit
AGTTAG1049900.44753781735051984No Hit
TCCAGA1044850.44538516854813853No Hit
GAGTGA1037490.4422478427688264No Hit
AACAAT1036490.441821575679246No Hit
CGAGCC1027730.4380874759745212No Hit
TCCTCC1022950.4360499192863266No Hit
ACGTAA1014830.4325886305189333No Hit
TCGTGG1011990.4313780319845248No Hit
AGAACG1002510.4273370199753021No Hit
GAAGAT985990.42029508765543294No Hit
CTCGTC984530.41967273770464547No Hit
GTCTGC978300.4170170937365593No Hit
GTCGAG969860.4134193995005002No Hit
TACGAA964280.41104082914064133No Hit
ATTCGA964020.4109299996973504No Hit
TTGAAT959880.40916525394648723No Hit
AATGTA955020.40709359589112626No Hit
ATCCGG948150.4041651409857085No Hit
CGAATT948120.4041523529730211No Hit
TTCTAC944480.4026007407669483No Hit
ATTGAA930070.3964582320060939No Hit
ATACCT927780.3954820803709546No Hit
GCCATA922580.3932654915051363No Hit
TGCGGA918270.3914282803490445No Hit
CCGCTC908770.3873787429980302No Hit
CTGTAT908070.3870803560353239No Hit
ACACGA905120.3858228681210616No Hit
GGCCAG902930.38488934319488033No Hit
GCCTGG899400.3833846203686614No Hit
CCGTCG897160.38242978208800116No Hit
CAGTCC888340.37867010635790155No Hit
CAGTAG878250.37436907142403475No Hit
CAACGG867040.36959061734983784No Hit
GCGTAT857470.36551124130255286No Hit
ACTAGC856750.36520432899805494No Hit
AGCCTA855840.36481642594653674No Hit
AACCTT846230.36071999921566855No Hit
TTAGTA844520.35999108249248596No Hit
CCATGA843970.35975663559321674No Hit
GGCCGT839210.3577276042468137No Hit
CGTGAA838990.35763382548710604No Hit
CAGGAC838260.3573226505117123No Hit
CCGGAA813400.3467256506647422No Hit
CCGACT810810.34562161890272886No Hit
AAGCGC808670.3447094073310267No Hit
GCTGTC806280.34369062898692937No Hit
CAGCCT804800.3430597536943503No Hit
TCAAGC800530.3412395932218417No Hit
CGACAA797350.3398840638769759No Hit
ATGCCG786790.3353826834110063No Hit
AACATA779230.33216010421377806No Hit
GTGGTG775440.33054455194426813No Hit
CTGTTC768600.3276288850515378No Hit
AACTAG760280.32408234286622845No Hit
ACAGCC751880.3205016993137526No Hit
CCTCGG742100.3163328071776558No Hit
ATGGCC737190.3142398357678157No Hit
GTAAGA725470.3092439854779328No Hit
GAGCAC709780.30255585484241543No Hit
TGCATA698740.2978498661734472No Hit
ACGAAC697830.29746196312192896No Hit
CGAAGC682430.29089744994239003No Hit
AAGAGG681840.29064595235953755No Hit
CACATT677700.28888120660867445No Hit
GGACTA673990.28729975570633093No Hit
GAGTCG669770.28550090858830146No Hit
CATACG666410.2840686511673111No Hit
GCTTCT664550.28327579438069145No Hit
TGTGAT662390.2823550574671977No Hit
GACTTG650530.27729952978477346No Hit
CCACTT648380.2763830555421755No Hit
CGTTGC639820.2727342092553668No Hit
TCCACG637970.27194561513964294No Hit
AGGACT627220.26736324392665306No Hit
GACACG622480.2653427379220417No Hit
CTGGAG616200.26266578059947643No Hit
GAGATA596170.25412765079517996No Hit
TCATGT578110.2464292671573569No Hit
CTGAGG571330.24353917629000144No Hit
CATGAG568640.24239251781903No Hit
GCGGCT558760.2381809989739751No Hit
GTTGGC513580.21892225186673017No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)