FastQCFastQC Report
Thu 1 Sep 2022
EGAF00001836336

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836336
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences175619
Sequences flagged as poor quality0
Sequence length6
%GC49

[WARN]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCAGG17307798.5525484144654No Hit
ATAACG5050.2875543079051811No Hit
ATCATG4130.23516817656403918No Hit
TTCACG2670.1520336637835314No Hit
ATCACA2500.14235361777484212No Hit
ATCACC2010.11445230869097306No Hit
ATCAAG1880.10704992056668128No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)