FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836344

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836344
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences25741557
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGACTA2518950.9785538613689918No Hit
TTCACA2504950.9731151849128629No Hit
ACTAAT2498640.9706638957387076No Hit
GGCTAC2434130.945603251582645No Hit
TCTTCA2404860.9342325330204385No Hit
GCTCAA2386230.9269952085648899No Hit
GAGAAG2366810.9194509873664596No Hit
TCAATG2335410.907252813029142No Hit
ATTCAT2334790.9070119573575133No Hit
GAGCAC2331850.9058698353017264No Hit
ACAGCC2286130.8881086719035681No Hit
AACATA2268480.8812520547999485No Hit
AGTGCA2252270.8749548444175307No Hit
CGAATT2230430.8664705091459698No Hit
CCTTAT2214070.8601150272300934No Hit
TAGCTT2139840.8312783877059184No Hit
TACAGT2127590.8265195458068056No Hit
AACCTT2074260.8058020732778519No Hit
CTTAGC2035640.7907990957967306No Hit
CTGTTC2029910.7885731232186148No Hit
CCTGCT2015430.7829479778554188No Hit
GAAGAT1997500.7759825872226765No Hit
GCCAAT1990120.7731156277765171No Hit
TCTCGC1979240.7688889992163256No Hit
TGCATA1966530.76395145794794No Hit
TTCTAC1956430.7600278413617327No Hit
ACCAGG1936130.7521417605003458No Hit
ATGGCC1926800.7485172711192256No Hit
CTTCAC1925350.7479539796291266No Hit
GAATAC1917730.7449937857294335No Hit
GAGATA1895080.7361947841771964No Hit
GTCTCA1890790.7345282183202827No Hit
GTAAGA1881850.7310552349261547No Hit
TGTGAT1881010.730728914338787No Hit
ATTGAA1880300.7304530957470832No Hit
TTACGT1859160.7222406942983286No Hit
ACTTGA1830960.7112856460081262No Hit
GAGTCG1822110.7078476255340731No Hit
TCATGT1770520.6878061027932382No Hit
CCTCGG1758380.683089993351995No Hit
GCACAT1735290.6741200619682796No Hit
GATCAG1730760.6723602616578321No Hit
CATGAG1714690.6661174380399756No Hit
AACTCT1714310.6659698168218806No Hit
TCGTGG1697330.6593734792343758No Hit
GTCTGC1692990.6576874895329758No Hit
CAGATC1691990.6572990126432523No Hit
TGATAA1682670.6536784080310294No Hit
ATCCGG1672850.6498635649739446No Hit
GGTAAT1666150.6472607698127973No Hit
CGTCAG1665840.647140341976983No Hit
GACTTG1652780.6420668337971941No Hit
ATGCCG1650630.6412316084842886No Hit
GCTTCT1636990.6359327837084602No Hit
CAGTAG1614210.627083280160559No Hit
CAGCCT1612600.6264578323681043No Hit
CTGAGG1597500.6205918313332794No Hit
CTGTAT1587790.6168197207340644No Hit
AAGAGG1574120.6115092416515443No Hit
AAGGCG1572560.6109032177035756No Hit
CGACAA1561630.6066571652988978No Hit
TCCAGA1560510.6062220711824075No Hit
CTGGAG1552320.6030404454555721No Hit
GCTGTC1545890.60054253905465No Hit
AGTTAG1544290.5999209760310925No Hit
CAGTCC1539620.5981067889560837No Hit
TTAGTA1535940.5966771940019013No Hit
GACACG1531790.5950650149095488No Hit
TCCTCC1527060.5932275192211567No Hit
GTGGTG1494950.5807535262921353No Hit
GGTACC1492850.579937724823716No Hit
CTATTA1484230.5765890540342994No Hit
AGGCTT1469560.5708900980620558No Hit
GGCCAG1469180.5707424768439608No Hit
TTGAAT1456220.5657078163531445No Hit
TACGGC1451540.5638897445092386No Hit
CCGTCG1448950.5628835893648546No Hit
GGCGTT1439860.5593523344372681No Hit
TAGAGC1438660.5588861621695999No Hit
AACTAG1424540.5534008684867042No Hit
ATCCAC1414870.549644296963078No Hit
TCAAGC1401630.544500862943139No Hit
TCCACG1399200.5435568641011109No Hit
CCATGA1397030.542713869250411No Hit
TGTGTG1378740.5356086269373682No Hit
CGTACT1378190.5353949646480203No Hit
GAGCCA1377230.5350220268338858No Hit
TGACCA1361790.529023943656555No Hit
GCGCAG1357940.5275283076311196No Hit
CACATT1352610.5254577258088934No Hit
CGTTGC1344150.5221712113218326No Hit
CATACG1341790.5212544058620852No Hit
AGATGC1339100.520209403028729No Hit
CAAGGA1324250.5144405212163351No Hit
CGTGAA1322990.5139510403352835No Hit
ACGTAA1312580.509906995913262No Hit
CCACTT1312210.5097632594640643No Hit
AGGACT1303520.5063873952923671No Hit
GTACTT1288070.5003854273461392No Hit
AATGTA1276900.4960461404879278No Hit
GACCAT1270910.493719163918484No Hit
CCGGAA1239990.48170745848823365No Hit
CGTCTC1235750.480060316475806No Hit
CCAGCG1216050.47240732174825323No Hit
CAGGAC1214450.47178575872469564No Hit
GCCATA1208220.46936554770171823No Hit
ACTAGC1202860.4672833115728004No Hit
GGCCGT1196770.46491748731438426No Hit
GTTGGC1167200.45343022568526065No Hit
CATAAC1159310.45036514302534225No Hit
AACAAT1159050.45026413903401413No Hit
ACCGCT1133960.44051725387085167No Hit
GACCGA1124660.4369044187964233No Hit
CAACGG1104400.42903387701062523No Hit
ACGAAC1101650.4279655655638857No Hit
TATAAG1098920.4269050236549405No Hit
ACACGA1069890.4156275395462676No Hit
CTCGTC1055020.40985088819607923No Hit
GAACCG1054880.40979650143151797No Hit
TAAGTC1049580.4077375739159834No Hit
TTCTGT1039580.4038528050187485No Hit
AATTGC1039480.40381395732977615No Hit
GATTCA1033920.4016540258229135No Hit
CCGCTC1018680.3957336380235275No Hit
CGAAGC1014950.39428461922485886No Hit
AGACGG1004700.3903027311051931No Hit
CTCCGC988050.3838345908912969No Hit
GACTAA979160.380381031341655No Hit
AATCGG972650.37785204678955514No Hit
GCATAA972050.37761896065572104No Hit
GCCTGG957970.3721492060484142No Hit
TATTCT945130.3671611627843646No Hit
TTCCAT936160.36367652508354487No Hit
CGATGT929140.3609494173176859No Hit
TGGCAT918770.3569209119712533No Hit
CGAGCC912100.35432977111679764No Hit
GGTGGT887300.344695544251655No Hit
TATGGT885230.3438913970899274No Hit
GTTACA873120.3391869419553759No Hit
AAGCGC872350.3388878147502888No Hit
GGATTC858620.33355402705438525No Hit
AGTAGG834620.3242305817010214No Hit
GTCGAG820190.31862486018231145No Hit
GGCAGG805440.3128948260588899No Hit
TAATGA805340.3128559783699176No Hit
TCGGAC804790.31264231608056964No Hit
GTACGC802710.3118342841499448No Hit
TACGAA797140.3096704678741849No Hit
TACTCG796900.3095772334206513No Hit
TCTCTG795900.3091887565309278No Hit
AGTTCC795700.3091110611529831No Hit
CGCTTG787030.30574296651908045No Hit
TTCGTT779710.30289931568630446No Hit
CCTGAC779470.3028060812327708No Hit
CTATGC776410.3016173419502169No Hit
ATCAGC775030.3010812438423985No Hit
TTAGCG773970.3006694583392916No Hit
ATTGCT773890.30063838018811373No Hit
ATTCGA764110.296839076206618No Hit
ACAGTG759240.29494719375366457No Hit
CTAGTT756870.29402650352501986No Hit
TTAGGC752440.29230555090354476No Hit
GAGTGA724490.2814476218357732No Hit
AAGCAT721660.2803482322378557No Hit
ATACCT720210.2797849407477566No Hit
CTACCG719850.27964508906745617No Hit
CGAGAG709490.2756204684899208No Hit
AGTCAA708540.27525141544468346No Hit
ATGTGA698230.27124621871163423No Hit
AGAGGT692590.26905520905359376No Hit
AGGTCA690310.2681694817450242No Hit
TGACAC675060.26224520917674093No Hit
TGCGAC664810.2582633210570751No Hit
AGCCTA663360.2577000295669761No Hit
AAGTTG659050.2560256941722678No Hit
ACCTGC656730.25512442778810934No Hit
GGATCG652330.25341512947332595No Hit
AGAACG648890.2520787689726771No Hit
CCGACT645470.2507501780098228No Hit
AGGTGT637420.2476229390475487No Hit
GGAGGC632900.24586702350599848No Hit
GCGTAT598980.23268988740657764No Hit
CAAGCT594050.2307746963402408No Hit
CACCTA588800.22873519266919246No Hit
TGCGGA586350.2277834242893699No Hit
GATCCT573310.22271768564737557No Hit
ACGCTA549700.2135457462810039No Hit
TATTGG536220.20830907780753122No Hit
GCGGCT448400.1741930373520141No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)