Basic Statistics
Measure | Value |
---|---|
Filename | EGAF00001836366 |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 27100441 |
Sequences flagged as poor quality | 0 |
Sequence length | 8 |
%GC | 49 |
Per base sequence quality
Per tile sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTATCCA | 261417 | 0.9646226790183967 | No Hit |
GAGAAGCT | 257618 | 0.950604456953302 | No Hit |
GATGTCCA | 223775 | 0.8257245703123429 | No Hit |
GCACGTCC | 198079 | 0.7309069250939495 | No Hit |
ATTATCGT | 187534 | 0.691996119177544 | No Hit |
TCTCTATA | 179501 | 0.6623545351162367 | No Hit |
GCTCCAGA | 174393 | 0.6435061333503761 | No Hit |
ACGTGCGC | 159412 | 0.5882265901134229 | No Hit |
CCAACAAT | 154573 | 0.570370792121058 | RNA PCR Primer, Index 36 (100% over 8bp) |
TGGCTTCC | 153315 | 0.5657288012398027 | No Hit |
TCCTCCTA | 147281 | 0.5434634809079306 | No Hit |
TCTGTGTT | 147189 | 0.5431240030374413 | No Hit |
CGCATATA | 146183 | 0.5394118863231783 | No Hit |
GCCGTCCT | 145337 | 0.5362901659054182 | No Hit |
CGACTTAC | 144919 | 0.534747755580804 | No Hit |
ATCCTAAC | 143494 | 0.5294895385650735 | No Hit |
TACAGCCT | 142824 | 0.5270172540734669 | No Hit |
GCATAACG | 142723 | 0.5266445664112993 | No Hit |
CACTGCTT | 140229 | 0.5174417641395577 | Clontech Universal Primer Mix Long (100% over 8bp) |
CCTGGCCA | 138561 | 0.5112868827485132 | ABI Solid3 GAPDH Forward Primer (100% over 8bp) |
AGGCCGAC | 138274 | 0.5102278593916608 | No Hit |
GTAGCACA | 136158 | 0.5024198683704078 | No Hit |
ACTTCTAT | 129695 | 0.47857154796853674 | No Hit |
ATACGTTA | 128704 | 0.47491478090707084 | No Hit |
TGAATTGA | 128177 | 0.47297016310546386 | No Hit |
CCTAACCT | 127273 | 0.4696344240302215 | No Hit |
GACGCTCA | 126964 | 0.4684942211826 | No Hit |
ACACTAGC | 126665 | 0.4673909181035098 | No Hit |
CGCTTACC | 123442 | 0.45549812270582607 | No Hit |
AGCGTTAT | 123031 | 0.4539815422191838 | No Hit |
GATGGTAC | 121450 | 0.4481476888143628 | No Hit |
TATAACGG | 119325 | 0.4403064880014314 | No Hit |
TAACTATG | 117078 | 0.4320151100124164 | No Hit |
TATTAGAG | 115978 | 0.4279561354739577 | No Hit |
GACCACTT | 115838 | 0.42743953871451756 | ABI Solid3 EF1 alpha Antisense Primer (100% over 8bp) |
CAGTGGTC | 113531 | 0.41892676211431396 | No Hit |
ATGTAATA | 113259 | 0.4179230884102587 | No Hit |
TCGTGTCA | 112864 | 0.41646554755326676 | No Hit |
CTGATTAC | 111691 | 0.4121372047045286 | No Hit |
AGCAGGAA | 110397 | 0.40736237465656006 | Illumina Paired End Adapter 2 (100% over 8bp) |
GTATGCCT | 109124 | 0.4026650341225075 | No Hit |
TACGTCAG | 108342 | 0.39977947222334875 | No Hit |
CTTCGCAA | 108109 | 0.39891970761656614 | No Hit |
AATCTGTA | 107840 | 0.39792710384307034 | No Hit |
TGGAAGAT | 107704 | 0.3974252669910427 | No Hit |
CTCGTATC | 106949 | 0.39463933446691885 | No Hit |
GCGTCGCT | 105323 | 0.3886394321037064 | No Hit |
ATTAGGCT | 104674 | 0.3862446371260158 | No Hit |
TAGGCATT | 104605 | 0.3859900287231488 | No Hit |
ATAAGCCA | 104323 | 0.3849494552505622 | No Hit |
TTCGGAAG | 103757 | 0.3828609283516825 | No Hit |
CCTGTGCG | 103506 | 0.3819347441615433 | No Hit |
TACTCAAT | 103449 | 0.3817244154809141 | No Hit |
GCGCTCAT | 102661 | 0.3788167137206365 | No Hit |
AATCGCGG | 101440 | 0.37431125198294746 | No Hit |
CGGACATC | 101041 | 0.3728389512185429 | No Hit |
TTACAATT | 100283 | 0.3700419487638596 | No Hit |
TGTGTCGA | 99890 | 0.36859178786057395 | No Hit |
GCCATGCG | 99777 | 0.3681748204761686 | No Hit |
ACTGTCAT | 99293 | 0.36638887167924683 | No Hit |
TACTGCAC | 99049 | 0.36548851732707965 | No Hit |
AGAACACA | 98705 | 0.3642191652895981 | No Hit |
CCGGTAGG | 97759 | 0.36072844718652364 | No Hit |
TCGGATTG | 97330 | 0.3591454471165248 | No Hit |
AGATGACT | 96313 | 0.35539274065687715 | No Hit |
GATATTGT | 95746 | 0.3533005237811444 | No Hit |
CCGCTGTA | 94589 | 0.34903122056205654 | No Hit |
CACACCAC | 93007 | 0.3431936771803824 | No Hit |
ATAGGTAT | 92567 | 0.341570087364999 | No Hit |
ACGCATTA | 92484 | 0.341263819286188 | No Hit |
CGCGTCGG | 92188 | 0.3401715861376573 | No Hit |
GACGATGT | 91984 | 0.3394188308596159 | No Hit |
TGAGCGTA | 91874 | 0.33901293340577004 | No Hit |
TACTGTTG | 91491 | 0.33759967227101584 | No Hit |
AGTTCGTC | 91155 | 0.33635984004835934 | No Hit |
TTAGGATC | 90126 | 0.332562853866474 | No Hit |
GGTAGCGA | 89853 | 0.3315554901855656 | No Hit |
CCAAGACG | 88978 | 0.32832676043906445 | No Hit |
TACTCCGG | 88933 | 0.32816071148067294 | No Hit |
AGCGAAGA | 88353 | 0.3260205249058493 | No Hit |
CGTTGTCT | 88008 | 0.32474748289151456 | No Hit |
GATCTTCC | 87566 | 0.32311651312242484 | No Hit |
GTCCATCC | 87045 | 0.3211940351819367 | No Hit |
AAGTGGAG | 86763 | 0.32015346170935 | No Hit |
CTTATGTA | 86533 | 0.3193047670331269 | No Hit |
CTTGCCGA | 86445 | 0.3189800490700502 | No Hit |
TCCGTATG | 86188 | 0.3180317250187921 | No Hit |
CTTCTAGA | 85956 | 0.3171756503888627 | No Hit |
GAACGCGC | 84526 | 0.31189898348886647 | No Hit |
TGCCAGGT | 83829 | 0.30932706962222495 | No Hit |
CGAGAGGA | 83420 | 0.307817869089289 | No Hit |
GTGTCGGC | 82979 | 0.3061905892970524 | No Hit |
TTGTGTAC | 82963 | 0.3061315496674021 | No Hit |
TAGGTCTC | 82932 | 0.30601716038495463 | No Hit |
CTCTCGAA | 81145 | 0.2994231717483859 | No Hit |
GGCCGTCA | 80866 | 0.2983936682063587 | No Hit |
AATATCAA | 80430 | 0.29678483829838787 | No Hit |
AATGTAGG | 80369 | 0.29655974971034604 | No Hit |
CTTGCGAT | 80149 | 0.2957479548026543 | No Hit |
CCGGCTGA | 78963 | 0.2913716422548253 | No Hit |
GCCTGGTC | 78502 | 0.28967056292552584 | No Hit |
GCGTACGA | 78091 | 0.28815398243888357 | No Hit |
GACTTATC | 75382 | 0.2781578351437159 | No Hit |
GTTATCCG | 75191 | 0.2774530495647654 | No Hit |
CGAGGAGT | 74619 | 0.2753423828047669 | No Hit |
ATTCGATC | 74344 | 0.27432763917015224 | No Hit |
CACTCTCG | 73594 | 0.2715601565302941 | No Hit |
ACCATAAG | 73549 | 0.27139410757190263 | No Hit |
CGATCTAA | 73516 | 0.2712723383357488 | No Hit |
TGTATATT | 73406 | 0.270866440881903 | No Hit |
ACTCGGAA | 73266 | 0.27034984412246277 | No Hit |
GAGGTATA | 71630 | 0.26431304199071887 | No Hit |
ACAGGCTG | 70948 | 0.26179647777687454 | No Hit |
CGTTCGCG | 70724 | 0.26096992296177024 | No Hit |
GAGTGGCA | 70612 | 0.2605566455542181 | No Hit |
AATTATTG | 70129 | 0.2587743867341495 | No Hit |
CGTGCCAC | 70080 | 0.25859357786834536 | No Hit |
TGCTTCTT | 69414 | 0.25613605328415134 | No Hit |
CAGCTAAC | 69384 | 0.256025353978557 | No Hit |
CGATGCTC | 69250 | 0.2555308970802357 | No Hit |
TATAGGTG | 68400 | 0.25239441675506313 | RNA PCR Primer, Index 39 (100% over 8bp) |
CATGTATT | 68115 | 0.251342773351917 | No Hit |
TTAGGTCA | 68032 | 0.2510365052731061 | No Hit |
TCTGCGCA | 67454 | 0.24890369865198872 | No Hit |
ACTCCGTT | 66492 | 0.24535394091926402 | No Hit |
ACTGAGGC | 66433 | 0.2451362322849285 | No Hit |
GGCTGAGT | 65365 | 0.2411953370057705 | No Hit |
CCACCAGG | 65069 | 0.2401031038572398 | No Hit |
GGCTCTTA | 64912 | 0.23952377749129616 | No Hit |
ACTTGTCC | 64419 | 0.2377046189026961 | No Hit |
ACCTAGGT | 64136 | 0.23666035545325628 | No Hit |
TTGACCGA | 63668 | 0.23493344628598478 | No Hit |
GTGCCACG | 63156 | 0.23304417813717498 | No Hit |
CTTCCTGT | 62908 | 0.2321290638775952 | No Hit |
GGAACCTG | 62447 | 0.23042798454829572 | No Hit |
GTTACCAA | 59585 | 0.219867270794597 | No Hit |
GGTTAATG | 58869 | 0.2172252473677458 | No Hit |
TCGGCAGC | 58444 | 0.2156570072051595 | No Hit |
GTATCTAG | 57992 | 0.21398913766753833 | No Hit |
TGAGCTCC | 57856 | 0.2134873008155107 | No Hit |
AAGTGAGA | 57427 | 0.21190430074551186 | No Hit |
CGCAAGTG | 56929 | 0.21006669227264604 | No Hit |
TTAAGGAC | 56835 | 0.2097198344484505 | No Hit |
AGAGCCGC | 56821 | 0.20966817477250646 | No Hit |
TAATGATT | 56073 | 0.2069080720863546 | No Hit |
CAGAGTGC | 55597 | 0.20515164310425799 | No Hit |
GCTGACAA | 55539 | 0.20493762444677563 | No Hit |
AACTTGAA | 55352 | 0.20424759877523765 | No Hit |
CGTGATCC | 54812 | 0.20225501127453976 | No Hit |
AGTGCTCA | 54538 | 0.20124395761677827 | No Hit |
CTTCTGCT | 54443 | 0.20089340981572956 | Illumina Single End Adapter 1 (100% over 8bp) |
GTTAAGCC | 54212 | 0.20004102516265326 | No Hit |
GGTCTCGC | 54116 | 0.1996867873847514 | No Hit |
GGAGAACC | 53169 | 0.19619237930482386 | No Hit |
AGCTGTGG | 52186 | 0.1925651320581831 | No Hit |
GACTCGGT | 51326 | 0.1893917519644791 | No Hit |
GCGCAATC | 51209 | 0.18896002467266124 | No Hit |
TTATGACG | 51199 | 0.1889231249041298 | No Hit |
GGAATATC | 51006 | 0.18821095937147295 | RNA PCR Primer, Index 37 (100% over 8bp) |
TGGAGTTA | 50479 | 0.18626634156986596 | No Hit |
TACACACA | 50086 | 0.18481618066658032 | No Hit |
CATCTCCG | 49624 | 0.1831114113604277 | No Hit |
CACACATG | 49133 | 0.18129963272553387 | ABI Solid3 EF1 alpha Sense Primer (100% over 8bp) |
GGAAGAAT | 48755 | 0.17990482147504536 | No Hit |
TGGCTGTG | 48742 | 0.1798568517759545 | No Hit |
GAACAAGT | 48269 | 0.1781114927244173 | No Hit |
CCGACACA | 47965 | 0.17698973976106144 | No Hit |
GGTCAACT | 47069 | 0.17368352050064426 | No Hit |
CGGAGCTG | 46963 | 0.17329238295421096 | No Hit |
GCACACCA | 46800 | 0.17269091672714845 | No Hit |
TATGCCGC | 46388 | 0.17117064626365305 | No Hit |
ATTCTGGC | 46073 | 0.17000830355491264 | No Hit |
AGCAAGCT | 45783 | 0.1689382102675008 | No Hit |
TCTCTGCC | 45525 | 0.1679861962393896 | No Hit |
CGCCTCAT | 45439 | 0.16766885823001923 | No Hit |
CTATGGAG | 44669 | 0.16482757605309817 | No Hit |
TAATTAGA | 44649 | 0.1647537765160353 | No Hit |
CCTACTCG | 44491 | 0.1641707601732385 | No Hit |
NNNNNNNN | 44040 | 0.16250658061247047 | No Hit |
GGAGTGCA | 43429 | 0.16025200475519938 | No Hit |
TTAATACT | 43317 | 0.15983872734764723 | No Hit |
ATGTCAAC | 43260 | 0.159628398667018 | No Hit |
TAACGGTC | 42596 | 0.15717825403653024 | No Hit |
AGTTACAT | 42538 | 0.15696423537904788 | No Hit |
CCGTTACT | 42296 | 0.156071260980587 | No Hit |
CCGGTCTT | 42240 | 0.15586462227681092 | No Hit |
TTGTGGCT | 41882 | 0.15454361056338528 | No Hit |
TTCAGTAA | 41823 | 0.1543259019290498 | No Hit |
TCGTGAAG | 41473 | 0.15303441003044932 | No Hit |
TGTGGAGC | 41295 | 0.15237759415058966 | No Hit |
CCATTGAC | 40987 | 0.15124108127982125 | No Hit |
TTAGCAGT | 40704 | 0.1501968178303814 | No Hit |
TTCCGAGC | 40658 | 0.1500270788951368 | No Hit |
TAGCTGGT | 40608 | 0.14984258005247958 | No Hit |
CAAGAGAG | 40279 | 0.14862857766779514 | No Hit |
TTGATGAG | 40250 | 0.14852156833905397 | No Hit |
TGCTATAC | 40188 | 0.14829278977415902 | No Hit |
ATCTGTCT | 40150 | 0.14815257065373955 | No Hit |
AACGGATA | 40075 | 0.14787582238975375 | No Hit |
GTTGCCTT | 39984 | 0.1475400344961176 | No Hit |
CACGATAC | 39744 | 0.146654440051363 | No Hit |
ATCTCAGT | 39577 | 0.14603821391688793 | No Hit |
CTGTGTTG | 39460 | 0.14560648662507006 | No Hit |
TCGTCTGG | 39085 | 0.14422274530514095 | No Hit |
ATAACTGA | 39060 | 0.14413049588381238 | No Hit |
CATAATAA | 39028 | 0.14401241662451175 | No Hit |
CAGGCGCA | 38910 | 0.14357699935584073 | No Hit |
TCTATGAA | 38898 | 0.143532719633603 | No Hit |
TCAGGTAC | 38852 | 0.14336298069835837 | No Hit |
ACGATAGA | 38598 | 0.14242572657765976 | No Hit |
TGACGGAA | 38013 | 0.1402670901185704 | No Hit |
GGCGTGTC | 37916 | 0.1399091623638154 | No Hit |
CTATCGCT | 37482 | 0.13830771240955084 | No Hit |
TGTACGCC | 37155 | 0.13710108997857268 | No Hit |
TTCACGGT | 36913 | 0.13620811558011175 | No Hit |
AAGCCTGT | 36777 | 0.13570627872808416 | No Hit |
AGGTCTTG | 36606 | 0.1350752926861965 | No Hit |
CAGGCTAG | 36477 | 0.1345992856721409 | No Hit |
TCGATTGC | 36382 | 0.1342487378710922 | No Hit |
CAGCGTCT | 36236 | 0.13371000125053314 | No Hit |
GGACACAT | 36030 | 0.13294986601878547 | No Hit |
CATCAGTG | 35682 | 0.13166575407389128 | No Hit |
ATGGCGCT | 35635 | 0.1314923251617935 | No Hit |
CTCACCTT | 35359 | 0.13047389155032568 | No Hit |
TGCAGTGT | 35092 | 0.1294886677305362 | No Hit |
TGGTTAGT | 34822 | 0.12849237398018726 | No Hit |
CCTTGGTT | 34801 | 0.12841488446627122 | No Hit |
AACAGAAT | 34688 | 0.12799791708186595 | No Hit |
AACCTTCT | 34437 | 0.12707173289172674 | No Hit |
GTCGACCG | 34209 | 0.12623041816920988 | No Hit |
TTCGTTCG | 33829 | 0.12482822696501508 | No Hit |
CTGCCTTA | 33818 | 0.12478763721963047 | No Hit |
TCTAGTGA | 33592 | 0.12395370245081991 | No Hit |
ATACCGAA | 33508 | 0.12364374439515577 | No Hit |
TGAGGCGG | 33475 | 0.12352197515900204 | No Hit |
TTATGCTA | 33431 | 0.12335961617746369 | No Hit |
AATATTCG | 33213 | 0.12255520122347824 | No Hit |
CTATCCTG | 33195 | 0.12248878164012164 | No Hit |
CAAGGTCC | 33015 | 0.1218245858065557 | No Hit |
CTGGCCTC | 32983 | 0.12170650654725508 | No Hit |
CATCCTCA | 32878 | 0.12131905897767495 | No Hit |
TGTCCTGC | 32842 | 0.12118621981096174 | No Hit |
TAGCCACC | 32817 | 0.12109397038963315 | No Hit |
AGGCGGTT | 32699 | 0.12065855312096213 | No Hit |
ACTGGTTA | 32580 | 0.12021944587543797 | No Hit |
CTCTTAAT | 32458 | 0.11976926869935439 | No Hit |
ATTAATCA | 32284 | 0.11912721272690728 | No Hit |
GTGTAGAT | 32205 | 0.11883570455550889 | Illumina Single End PCR Primer 1 (100% over 8bp) |
ATGTGCAT | 32155 | 0.11865120571285168 | No Hit |
GTGGTACC | 32124 | 0.11853681643040422 | No Hit |
AAGCATCC | 31859 | 0.11755897256432102 | No Hit |
ATCATGGA | 31797 | 0.11733019399942607 | No Hit |
ATTGAGTA | 31744 | 0.11713462522620942 | No Hit |
TGTGAACA | 31633 | 0.11672503779551041 | No Hit |
TCATTGCG | 31524 | 0.11632283031851769 | No Hit |
ACAACCTT | 31394 | 0.11584313332760895 | No Hit |
GCTCACGT | 31389 | 0.11582468344334322 | No Hit |
ATCCTCCG | 31273 | 0.11539664612837851 | No Hit |
TCACGCCG | 31135 | 0.11488742932264459 | No Hit |
CTCTATAG | 30971 | 0.11428227311872895 | No Hit |
AGCAACTA | 30862 | 0.11388006564173625 | No Hit |
TACCTCGC | 30710 | 0.11331918916005833 | No Hit |
ACGCTATT | 30483 | 0.11248156441439458 | No Hit |
CTCATAGG | 30378 | 0.11209411684481443 | No Hit |
CTCAATTC | 30272 | 0.11170297929838115 | No Hit |
TGGTTCCA | 30168 | 0.11131922170565416 | No Hit |
CGCTGAAG | 30166 | 0.11131184175194789 | No Hit |
CTTAACAC | 30014 | 0.11075096527026997 | No Hit |
TGTTGCGT | 29901 | 0.11033399788586465 | No Hit |
TCCGACTT | 29578 | 0.1091421353622991 | No Hit |
TTCCTTAT | 29397 | 0.10847424955188 | No Hit |
AGTAACCG | 29394 | 0.10846317962132056 | No Hit |
CACCACGG | 29264 | 0.1079834826304118 | No Hit |
GTTCTAAT | 29235 | 0.10787647330167062 | No Hit |
CTCCTTCA | 29153 | 0.10757389519971279 | No Hit |
AGCATAGT | 29038 | 0.10714954786160123 | No Hit |
ACACGAAT | 29020 | 0.10708312827824462 | No Hit |
GGTAATTA | 28735 | 0.10603148487509852 | No Hit |
TTATCGTC | 28641 | 0.10568462705090297 | No Hit |
CGAAGCAA | 28573 | 0.10543370862488917 | No Hit |
GCAGTTAA | 28360 | 0.10464774355516947 | No Hit |
GATTGGAT | 28241 | 0.10420863630964529 | No Hit |
GGAAGGCG | 28238 | 0.10419756637908585 | No Hit |
CGGTTGTT | 27954 | 0.1031496129527929 | No Hit |
TCGGTAAT | 27937 | 0.10308688334628945 | No Hit |
GACATCTA | 27907 | 0.10297618404069514 | No Hit |
GCCTACAT | 27657 | 0.10205368982740907 | No Hit |
TGTCTTAA | 27639 | 0.10198727024405248 | No Hit |
CACATTAT | 27395 | 0.10108691589188532 | No Hit |
AAGCGCAC | 27369 | 0.10099097649370356 | No Hit |
GATTATCT | 27361 | 0.10096145667887839 | No Hit |
AGTCATGA | 27310 | 0.10077326785936805 | No Hit |
ACGGACGG | 27278 | 0.10065518860006743 | No Hit |
AGTGGATG | 27142 | 0.10015335174803981 | No Hit |
Adapter Content
Can't analyse adapters as read length is too short (12 vs 0)