FastQCFastQC Report
Sun 11 Sep 2022
EGAF00001836372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19354502
Sequences flagged as poor quality0
Sequence length6
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTGC3980682.0567204467467053No Hit
ATTGCT3814891.9710607898875414No Hit
ATTCGA3802491.9646540117642912No Hit
TCTTCA3653901.8878811761728616No Hit
TTCTAC3490721.8035700427735109No Hit
TGCGAC3386701.7498254411299243No Hit
TTCCAT3323991.7174247107985523No Hit
TAGAGC3249791.6790873771900718No Hit
TTCACA3236661.672303425838598No Hit
TACAGT3223321.6654109725995534No Hit
GATTCA3223091.6652921371988803No Hit
CCACTT3101471.6024540440255193No Hit
AGTGCA3044331.5729311970930588No Hit
TGATAA3039041.5701979828775754No Hit
TGTGAT2990531.545134046848635No Hit
CTTCAC2948591.5234646698737069No Hit
GCCATA2929131.5134101616254452No Hit
AGAACG2907741.5023584693628387No Hit
TACGAA2878791.4874007091476702No Hit
GGCAGG2796431.4448473021935673No Hit
CCAGCG2784321.4385903600102963No Hit
CTGAGG2782091.4374381732994215No Hit
ATGTGA2781351.4370558333146468No Hit
CGTACT2747451.4195405286067293No Hit
CAAGGA2721011.4058796242858638No Hit
CAGTCC2700271.395163771199073No Hit
CCGGAA2688631.3891496665736995No Hit
CCTGAC2562721.324095034839956No Hit
CTGTAT2547821.316396567578954No Hit
TTCTGT2488461.2857267006921698No Hit
GTACTT2480441.2815829619382613No Hit
AGTTAG2468831.2755843575825407No Hit
TCGGAC2441671.2615514467900026No Hit
CGACAA2426101.253506806840083No Hit
TGACAC2380611.230003231289547No Hit
GACTAA2320631.1990130254966003No Hit
GACTTG2314741.1959698058880566No Hit
CTAGTT2180911.1268231029659146No Hit
ACCAGG2164841.1185201251884447No Hit
ATACCT2162891.117512607660998No Hit
AACTCT2146441.1090132931345895No Hit
GAACCG2136901.1040842073849277No Hit
GACCAT2130801.1009324858888128No Hit
CTACCG2121081.095910398521233No Hit
CTATTA2102961.0865482356508063No Hit
ATTCAT2059641.0641658462718389No Hit
GTGGTG2050011.0591902597132181No Hit
ATTGAA1942801.00379746272986No Hit
GCGCAG1937961.001296752559172No Hit
AGGTCA1933820.9991577153470547No Hit
AACATA1933010.998739208066423No Hit
AGTTCC1932090.9982638664637302No Hit
GTCTGC1909730.986710998815676No Hit
CCGTCG1888240.9756076389875596No Hit
TGCGGA1877740.9701825446090011No Hit
GCGTAT1846440.9540105966043455No Hit
TCATGT1832150.9466273014929549No Hit
CCGCTC1794340.9270917949735933No Hit
GATCCT1781590.9205041803710577No Hit
GTCTCA1761260.9100001643028583No Hit
TCCTCC1733470.8956417478476068No Hit
GCTCAA1710650.8838512093982062No Hit
CGAAGC1690490.8734350281913738No Hit
GACACG1685670.870944651533788No Hit
ATCAGC1676560.8662377363158195No Hit
GGATCG1606230.8298999374925793No Hit
CGAGCC1541850.7966363588171889No Hit
TTAGCG1502850.7764860082682572No Hit
ACTAAT1496830.7733756208245502No Hit
CGCTTG1432610.7401947102539761No Hit
GAAGAT1403320.7250612803160732No Hit
GCGGCT1383870.7150119388243624No Hit
GCTGTC1359360.7023482185178415No Hit
GGTACC1317720.6808338442394436No Hit
TATAAG1287230.6650804035154197No Hit
GCCTGG1285390.6641297203100343No Hit
CGAGAG1275530.6590352983507403No Hit
ACACGA1250580.646144240755975No Hit
CATGAG1225650.6332635166743117No Hit
TATTGG1204350.6222583252206644No Hit
GTTGGC1159860.5992714253252293No Hit
TCCACG1079290.5576428677937567No Hit
GAGCCA1070940.553328626073665No Hit
CAGGAC739800.3822366496435816No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)