FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences23210283
Sequences flagged as poor quality0
Sequence length6
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AATTGC4739822.042120727265583No Hit
ATTCGA4546891.9589980871840293No Hit
ATTGCT4509451.9428673058402606No Hit
TCTTCA4401631.896413757643541No Hit
TTCTAC4218721.817608169620336No Hit
TGCGAC4076061.7561440332287201No Hit
TAGAGC4039181.7402545242554777No Hit
TTCCAT3905991.682870475986872No Hit
TACAGT3903481.6817890587546909No Hit
TTCACA3869541.667166229726712No Hit
GATTCA3855021.6609103818337758No Hit
CCACTT3743141.6127076089507395No Hit
TGATAA3734191.6088515594575044No Hit
TGTGAT3652731.5737550464162802No Hit
AGTGCA3622391.5606832540559716No Hit
AGAACG3556441.532269123991293No Hit
GCCATA3523411.51803836256542No Hit
CTTCAC3503461.5094430343654148No Hit
GGCAGG3421371.4740750899073485No Hit
TACGAA3399781.4647731783365159No Hit
CCAGCG3387681.459559971759069No Hit
CTGAGG3364681.4496505708267322No Hit
ATGTGA3355441.4456695767130456No Hit
CGTACT3306661.424653029866116No Hit
CAAGGA3244241.3977597774227914No Hit
CAGTCC3232871.3928610866140667No Hit
CCGGAA3197981.3778289562432307No Hit
CTGTAT3139891.3528012562362983No Hit
GTACTT3051461.3147017638690575No Hit
CCTGAC3042621.3108931071628898No Hit
AGTTAG3021481.301785075175516No Hit
TTCTGT3007321.2956843309493469No Hit
TCGGAC2846671.2264693196545686No Hit
GACTTG2835121.2214930770124603No Hit
CGACAA2832901.2205366044007304No Hit
TGACAC2826421.2177447383989242No Hit
GACTAA2806081.2089813812265882No Hit
ACCAGG2625441.1311538079910528No Hit
CTAGTT2617561.1277587610629307No Hit
AACTCT2607411.1233856993471385No Hit
ATACCT2592901.1171341598893905No Hit
CTACCG2590341.1160312004812694No Hit
GAACCG2567471.1061778092063763No Hit
GTGGTG2551401.0992541538593046No Hit
CTATTA2532991.091322324678247No Hit
GACCAT2526731.0886252442505764No Hit
ATTCAT2512731.0825934349874147No Hit
GCGCAG2380791.0257479411173056No Hit
ATTGAA2360491.0170018176857214No Hit
GTCTGC2356391.0152353592586527No Hit
AACATA2330681.0041583723903755No Hit
AGTTCC2322391.0005866796195462No Hit
AGGTCA2318000.9986952765720264No Hit
CCGTCG2312480.9963170203482654No Hit
GCGTAT2283960.9840293631921678No Hit
TGCGGA2264060.9754555771681026No Hit
TCATGT2199990.9478514329187627No Hit
GTCTCA2187430.9424400383226693No Hit
CCGCTC2165310.932909779686874No Hit
GATCCT2149670.9261713870528852No Hit
TCCTCC2102600.9058915826230985No Hit
GACACG2081590.8968395602931682No Hit
GCTCAA2068710.8912902957710597No Hit
CGAAGC2019310.8700066259424756No Hit
GGATCG2011600.8666848224125488No Hit
ATCAGC1990590.8576328000826186No Hit
TTAGCG1846680.7956301092925062No Hit
CGAGCC1838450.792084267132805No Hit
ACTAAT1774800.7646610771613599No Hit
CGCTTG1746840.7526146923757888No Hit
GAAGAT1713030.7380478730052538No Hit
GCTGTC1659240.7148728001291497No Hit
GCGGCT1631700.7030073696214734No Hit
GGTACC1604040.6910902378915414No Hit
TATAAG1582740.68191327094116No Hit
GCCTGG1553440.6692895558404005No Hit
CGAGAG1552090.6687079170900243No Hit
ACACGA1508860.6500825517724191No Hit
CATGAG1502010.647131273668658No Hit
TATTGG1493930.6436500580367762No Hit
GTTGGC1388890.598394254822313No Hit
TCCACG1320010.5687177532475585No Hit
GAGCCA1293690.5573779518328148No Hit
CAGGAC884520.38108970924654384No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)