FastQCFastQC Report
Wed 27 Sep 2023
EGAF00001836382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420736132
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAT101178222.4047903734590594No Hit
CCTGCT91514822.175111977309332No Hit
CAGCCT86772432.0623954873454986No Hit
TCGTGG86176842.0482395840440915No Hit
CTGTTC85810982.0395438725951878No Hit
GCACAT85302892.02746765756738No Hit
TTCACA84240632.0022200042472225No Hit
AAGCGC83575331.9864072430080715No Hit
CAGTAG82982261.9723112347289442No Hit
CAGATC80511061.9135760843092982No Hit
AAGGCG79919711.8995209567596631No Hit
AACTAG77846681.8502494575388644No Hit
CGTGAA77832651.8499159943791088No Hit
TCTCGC77725021.8473578589632518No Hit
GCGCAG76508061.8184333167753703No Hit
CTGAGG74967841.7818255742295028No Hit
TTCTAC74852481.7790837132095894No Hit
CTTCAC74785591.77749388065392No Hit
GAGAAG74350281.7671474909124278No Hit
TGTGAT73844691.7551306955495802No Hit
CGAAGC73132231.7381970417506238No Hit
ACAGCC73124331.7380092756093504No Hit
ACTAAT73086351.7371065720592782No Hit
TCATGT72746641.7290323903058555No Hit
CCAGCG72618711.7259917672105232No Hit
GTCTCA72189531.715791074487513No Hit
GTCGAG71914791.7092610909870705No Hit
CAAGGA71492721.6992293877912057No Hit
CGAGCC71355751.6959739031873782No Hit
TTAGTA71304491.6947555623770385No Hit
GCTTCT71232641.6930478412060888No Hit
GAGTCG71038711.6884385389558128No Hit
TCAATG70941871.686136858813923No Hit
GGCCAG70899121.6851207825431072No Hit
GGACTA69865241.6605476612595753No Hit
GTGGTG69793801.658849684913679No Hit
CCACTT69269191.6463808247398157No Hit
AACTCT68821341.635736385958884No Hit
CCGGAA68474751.6274986812874914No Hit
CCATGA67434201.6027670283378468No Hit
GCTCAA67278441.5990649455321797No Hit
AAGAGG67200781.5972191330598629No Hit
ACGTAA67195571.597095302478086No Hit
GACACG66822421.5882263232861589No Hit
CAGGAC63345721.5055925836196071No Hit
ACTAGC63154281.5010424633556312No Hit
TCCAGA62999341.4973598702000712No Hit
GTTGGC62275611.4801583525514752No Hit
AATGTA60843511.4461203916757974No Hit
ACTTGA60045261.4271476926540743No Hit
CTGGAG54056181.2848000418466554No Hit
CTCGTC53745861.2774243976745026No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)