FastQCFastQC Report
Wed 20 Sep 2023
EGAF00001836386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419582133
Sequences flagged as poor quality0
Sequence length6
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAGCT112986352.692830345090028No Hit
GCATAA99312042.3669272876307152No Hit
CTAGTT97808612.3310956856211034No Hit
AGCCTA97091302.313999867101109No Hit
AGTGCA95121932.2670634071065177No Hit
AACCTT93282752.2232297961076433No Hit
AGAACG91999162.192637692701753No Hit
CGATGT91996582.1925762029528553No Hit
AGACGG90848162.1652056380579965No Hit
GCGTAT90060442.1464317213907678No Hit
GGCTAC88807532.116570821665564No Hit
GTAAGA88428592.1075394552131703No Hit
TGGCAT88172462.101435048474764No Hit
GACCAT88150952.100922395568259No Hit
ATGTGA87480982.0849548424408244No Hit
AGAGGT85351342.0341986297114327No Hit
TACAGT84916262.02382926538962No Hit
GAATAC84526592.014542168314874No Hit
ATTGCT83700251.9948478120730657No Hit
TCTTCA83225081.9835229733197433No Hit
AATCGG82614321.9689665860962675No Hit
ACCAGG82505291.9663680483744526No Hit
ACCTGC82434521.9646813702622556No Hit
GGAGGC82283781.9610887482665997No Hit
TGACAC82154141.9579990075506863No Hit
TGATAA81970981.9536337120436917No Hit
AGGACT81885211.951589535391394No Hit
GGATTC81673751.9465497593054086No Hit
GAAGAT81426141.94064841173778No Hit
ATCCAC79729301.9002072235521048No Hit
CAGTCC79726161.9001323871910436No Hit
AGGTCA79244321.8886485807535565No Hit
GCCTGG78798801.878030397447834No Hit
AAGTTG78672371.8750171614195021No Hit
CTATGC77840201.855183857411774No Hit
GACTAA77735351.8526849426164675No Hit
TTGAAT77681121.8513924662278218No Hit
ACGCTA77399311.8446760219887628No Hit
GAACCG76310491.8187259179599051No Hit
AGTAGG73774781.7582917430852565No Hit
CGAGAG73424221.7499367638707342No Hit
CGACAA72503621.7279958868029304No Hit
TATAAG72446811.7266419206653874No Hit
CGTCAG70635421.6834706352951403No Hit
TCAAGC67160261.6006463268539606No Hit
CGTCTC67055121.5981405004202123No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)