FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001836388

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836388
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences394079435
Sequences flagged as poor quality0
Sequence length6
%GC46

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCAT104157002.6430458113095905No Hit
TGCGGA101565242.577278360135692No Hit
TTCCAT96683902.4534114549773447No Hit
TGCGAC94893522.407979497839059No Hit
AACATA93979782.384792801989274No Hit
CCGCTC91475012.3212327737934357No Hit
CCGACT90855582.3055143692032547No Hit
TACGAA89317452.266483405813856No Hit
ACCGCT89117822.2614176758551228No Hit
ATACCT88363822.242284477493732No Hit
TTCTGT87101022.2102401765775976No Hit
TGACCA86736912.20100066881186No Hit
TGTGTG86713262.2004005359985355No Hit
CATAAC83284342.1133896520126707No Hit
CGTACT80459632.0417109560665097No Hit
GCGGCT80388732.0399118264062674No Hit
GATCCT80171232.034392634571251No Hit
AGTTCC79430412.0155938865472645No Hit
AATTGC79374142.01416600183666No Hit
TAAGTC79340742.0133184569755587No Hit
TCGGAC79086532.0068677270611697No Hit
ACGAAC78421371.9899888965279298No Hit
GACCGA78140821.9828697734506244No Hit
CGCTTG77969941.9785335918378995No Hit
CTATTA77866571.9759105166195743No Hit
CACCTA76978891.953385108766206No Hit
AACAAT75702581.9209979835664348No Hit
CGAATT75496861.9157777162363216No Hit
TTAGCG75474921.9152209756898377No Hit
ACAAGT75341531.9118361251203073No Hit
TACTCG75263531.9098568287380946No Hit
AGTCAA74997871.9031155482650344No Hit
GTACGC74547031.8916752151758438No Hit
ACAGTG74373431.887270011945688No Hit
ATCAGC72942261.8509532221593854No Hit
GGTGGT72759401.846313040922828No Hit
TATTGG71692121.8192301762714413No Hit
GGCAGG70943991.8002459326506088No Hit
ATGCCG70662921.7931136142640884No Hit
TTACGT69730761.769459499960966No Hit
TATTCT68975601.7502968659097882No Hit
CATTAA66997231.7000945507344223No Hit
GACTTG66223131.6804513029206916No Hit
GTTACA66025561.6754378466869249No Hit
ATTCAT65153641.653312358205142No Hit
TAATGA62821241.5941263212580479No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)