FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001836390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences397413408
Sequences flagged as poor quality0
Sequence length6
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAT88974462.2388389070154373No Hit
GACACG87886552.2114641386231235No Hit
TCGTGG84896052.1362150418437817No Hit
GCCAAT83714422.1064820238777653No Hit
AACCTT81201392.043247368241788No Hit
GATCCT80105982.0156838794930643No Hit
GGCGTT79389921.9976658663715743No Hit
AGGACT78824411.9834360998710947No Hit
GTACTT78430651.9735280295324107No Hit
GACCAT76407911.9226304010356892No Hit
GCGCAG75611381.9025875443034876No Hit
CGTTGC75459991.8987781610025598No Hit
TACGGC75160791.8912494769174977No Hit
CCTGCT74906021.8848387722238096No Hit
GTTGGC74135941.865461469281882No Hit
GGATCG73296401.8443363642124524No Hit
CATTAA73172431.8412169425345608No Hit
GTGGTG72780311.8313501390471456No Hit
CTTAGC72658211.8282777716447856No Hit
TGCGGA72285431.8188976150497669No Hit
AATGTA72014531.8120810357762263No Hit
GGTGGT71741241.8052043176157762No Hit
AAGCGC71568041.8008461355184069No Hit
AGGCTT71022441.787117358657411No Hit
CTGGAG70994201.7864067636087406No Hit
CAGTCC70872831.7833527649877379No Hit
ACGTAA70780861.7810385501638635No Hit
GGACTA70000531.7614033294015083No Hit
TTAGTA69955171.7602619486859385No Hit
TTAGGC69446171.747454127164225No Hit
AACTAG69295191.743655060576114No Hit
CTGAGG69239731.7422595364472455No Hit
ACTAAT69001601.7362675393176468No Hit
ACAGCC67893511.7083849873530184No Hit
TAGAGC67482401.6980403439231722No Hit
GGCCAG67389371.6956994566222585No Hit
GATTCA67314901.6938255892966751No Hit
CCACTT65995851.6606347111469375No Hit
TACAGT65712321.6535003267932016No Hit
ATCCAC65384891.6452612992866107No Hit
TCCTCC64894821.632929807944477No Hit
TGACCA64880941.6325805494715468No Hit
TGACAC64796851.6304646168354742No Hit
AAGTTG64773771.6298838613920144No Hit
CTTCAC63573031.5996699839578639No Hit
AAGGCG62860431.5817390338274646No Hit
GAGCCA62608001.575387209884977No Hit
GAGCAC61945231.558710117802568No Hit
TCTCGC61255721.5413601747427705No Hit
GGCAGG56886901.431428805743766No Hit
TCCAGA55580031.3985444094528388No Hit
CAGTAG40805991.0267894635301285No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)