FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001836392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences363655692
Sequences flagged as poor quality0
Sequence length6
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTCACA89629692.4646854695732356No Hit
AGTGCA88907272.4448199754838433No Hit
TATGGT88278562.427531369425121No Hit
AGTTAG87397692.4033087319309714No Hit
CCGCTC84545162.3248683262738536No Hit
TGGCAT83413392.2937463055026237No Hit
GACTTG83242752.2890539549151345No Hit
GTCGAG80775262.221201586472074No Hit
TAGCTT80681382.2186200236898808No Hit
TGCGAC80676942.218497930179517No Hit
CTATGC79280052.1800854969155825No Hit
TGTGAT77807962.1396051735662094No Hit
GAACCG76302102.0981962245760752No Hit
GCTCAA76136042.0936298172943215No Hit
CCTGAC76087632.0922986130518204No Hit
CTATTA75658802.080506414842532No Hit
AGGTGT75410882.073688977209794No Hit
CGAGAG75313532.0710119944994565No Hit
GTCTGC74999092.0623653540943336No Hit
GCGGCT74850162.0582699967748614No Hit
ATACCT74598522.051350264579387No Hit
ACACGA74577602.0507749951566825No Hit
GCACAT74361622.0448358608394885No Hit
TATTGG73176782.012254492636953No Hit
CCATGA72207211.9855927347893678No Hit
TTCGTT72141871.9837959802922596No Hit
CCGACT70282701.9326715227105533No Hit
CGACAA69826001.9201129402368875No Hit
GAGTGA69562511.9128673503617262No Hit
AGTCAA69100661.9001671504154538No Hit
CACATT68913551.8950218989010077No Hit
CGATGT68701961.889203483167259No Hit
ACGAAC68178381.8748057984473951No Hit
TCCACG67785921.8640137220786304No Hit
TCATGT66659181.8330300189554025No Hit
ACAGTG65822381.8100192420472276No Hit
ACAAGT65755251.8081732651664364No Hit
GTACGC64575381.7757285646996006No Hit
TCAAGC63260651.7395754113481605No Hit
CGTGAA61521451.691749953414726No Hit
GATCAG61471951.690388775765402No Hit
CTCCGC60073261.6519268451324005No Hit
GAGTCG59904941.6472982911539302No Hit
TGCATA55353851.5221499681627422No Hit
AACAAT53995871.4848075030267915No Hit
CTCGTC49118281.3506809072577366No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)