FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001836394

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836394
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences356579234
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTCG88952442.4946051681742074No Hit
CGAAGC87136822.443687452646219No Hit
CAGATC84827572.3789262500911645No Hit
AGACGG83883732.352456957715042No Hit
AAGCAT82078102.301819404323472No Hit
TTCCAT81318542.2805181077931196No Hit
CAGCCT78107632.1904705196601553No Hit
TAAGTC77286862.1674526341037574No Hit
GCGTAT77069732.161363384385979No Hit
AGTAGG74484082.0888507489474275No Hit
GAAGAT74026842.076027792465335No Hit
ATGTGA73918142.072979381631629No Hit
AACATA73820712.070247029584454No Hit
TCGGAC73566782.0631257511759644No Hit
TTAGCG73149802.0514318565169165No Hit
CCTTAT73144492.0512829415074685No Hit
TAATGA72620472.036587189482829No Hit
CTACCG72281942.0270933668560183No Hit
CTAGTT71079061.9933594899135376No Hit
TGTGTG71024301.991823786350946No Hit
TACGAA70243791.9699349626175933No Hit
AATCGG70239941.969826992224679No Hit
AGTTCC70135881.9669087067476283No Hit
GGCTAC69818421.958005776634766No Hit
GACCGA69739991.9558062654876869No Hit
TCTCTG69723501.9553438156749197No Hit
AGAACG69678821.9540907982319575No Hit
ACGCTA69289781.9431804601386296No Hit
CAAGGA68915141.9326739593590578No Hit
AGCCTA68822541.9300770610775386No Hit
GCTTCT68440061.919350693316033No Hit
CTGTTC65112701.8260373513506396No Hit
TTGAAT64979921.8223136347867077No Hit
AGAGGT64626121.8123915763417677No Hit
ATCCGG64623411.8123155764028591No Hit
CCGGAA64507851.809074781959961No Hit
GGATTC64122161.7982583921305972No Hit
TCTTCA63286261.774816196952176No Hit
CGTCAG62184281.7439119856317826No Hit
ACTTGA61182171.7158085543478394No Hit
CAGGAC60180661.6877219496186364No Hit
TATAAG59815171.677472053798848No Hit
CATGAG57918771.6242889231177158No Hit
CGAGCC57581131.614820059880436No Hit
ATGCCG54223611.5206609030967855No Hit
GACTAA51448601.4428378069823327No Hit
GGCTTC4345690.12187165111247056No Hit
GGGTTC4172760.11702195759386257No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)