FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001836398

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836398
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395880273
Sequences flagged as poor quality0
Sequence length6
%GC56

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCGT89950312.2721594414986166No Hit
CCTTAT84473192.1338065006335896No Hit
TCGTGG80980892.0455904353688266No Hit
TGTGTG80639602.0369693945320684No Hit
TAGCTT80511702.033738619756888No Hit
CCTGCT80321272.0289283270247718No Hit
CAAGCT79540832.0092142858555624No Hit
GGCCAG78684291.9875779463252012No Hit
GCGCAG78674301.9873255973024955No Hit
GTACTT78311931.9781720722416498No Hit
CAGATC78039771.9712972664338846No Hit
CTGTTC77196231.9499893090151525No Hit
TCATGT76359291.9288480686684786No Hit
CCACTT75871931.9165372759051322No Hit
TACGGC75748751.9134257290966354No Hit
CCGTCG75444381.9057372934569032No Hit
GTGGTG74333081.8776656749451115No Hit
CTTAGC74293051.8766545106429184No Hit
GACTTG74043931.8703616989776097No Hit
AGTTAG73596981.859071669378181No Hit
TCTCTG73457761.8555549495642587No Hit
GCCATA73363731.853179736490684No Hit
GTCTGC73155581.847921833680255No Hit
TTAGTA73086671.8461811558869972No Hit
TTCTAC72669191.8356355432744689No Hit
GAGTCG72666761.8355741610797567No Hit
ATCCGG72409371.8290724478711269No Hit
GTTGGC71549021.8073398671218963No Hit
CTGAGG70524761.7814668931482727No Hit
CATACG69684161.7602332006070938No Hit
TCCAGA69534181.7564446814453925No Hit
CCTCGG69018991.7434308983615359No Hit
CATGAG68590401.7326046453443766No Hit
CGAAGC67766801.7118003755645588No Hit
ACGAAC67765531.7117682951582687No Hit
CCATGA67579101.707059043075885No Hit
CGTTGC67216171.6978913723240765No Hit
GGATCG66789791.6871209442658943No Hit
TGCATA65969391.6663975070058619No Hit
GCTCAA63632611.6073700646356783No Hit
GTCGAG63584721.6061603554567623No Hit
GCCTGG63287751.5986588450190342No Hit
CAGGAC62923091.5894474741862168No Hit
CTACCG62245571.5723332089346114No Hit
TTAGGC60912251.538653329159445No Hit
TTAGCG60864591.5374494298178882No Hit
AAGAGG60709891.5335416826895034No Hit
CACATT60332321.524004203159676No Hit
AAGGCG59093791.4927187341815338No Hit
CGTGAA58715421.48316104652176No Hit
ACAGCC57678951.4569796459648294No Hit
TCCACG55078341.3912878149399477No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)