FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001836400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401230096
Sequences flagged as poor quality0
Sequence length6
%GC51

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGTAT99597222.4822968414612645No Hit
TGGCAT97921112.440522557410549No Hit
ACTAAT96213822.397971163160203No Hit
CCGACT95223192.3732813402910833No Hit
AGGCTT94863332.3643124218677753No Hit
GCGGCT92958752.3168438989681372No Hit
CAGTAG92958492.3168374188959144No Hit
GGTAAT91547542.2816718115781622No Hit
ACGTAA88419392.203707819564961No Hit
CAGCCT86758672.1623171059431194No Hit
AAGCGC86603322.1584452627900577No Hit
CTAGTT85186062.1231223891041315No Hit
TCTCGC84877352.115428300273866No Hit
GAACCG84227102.0992218888784455No Hit
CAGTCC84002452.0936228572444873No Hit
AACATA83067942.0703317330412823No Hit
CTATGC81474422.030615868855461No Hit
TAGAGC81375612.0281531921772884No Hit
CGTCTC80692452.0111265531786033No Hit
GCATAA80362772.0029098216002224No Hit
TGCGAC78363071.9530705892012648No Hit
AACTAG78347301.9526775478976033No Hit
GCCAAT78101311.94654665187429No Hit
AACCTT78016691.9444376375993488No Hit
CAAGGA77153741.9229300286586675No Hit
CCGGAA77075791.9209872531595933No Hit
TATTGG76569991.9083810203509757No Hit
CAACGG76495771.9065312089649429No Hit
CGACAA76401951.9041928998267368No Hit
AACTCT75892651.8914994352766599No Hit
AGGACT75462001.8807661925739487No Hit
TACAGT74197661.8492545982891573No Hit
GCTTCT74077551.8462610541558178No Hit
GAGCCA72808771.8146388001761462No Hit
TCAATG72375581.8038422521524904No Hit
ATGCCG70998401.769518306523048No Hit
GATTCA70906921.7672383180348465No Hit
GTACGC69915281.7425233225774768No Hit
ACAGTG69464231.7312816434388312No Hit
GAGCAC69033801.7205538838741548No Hit
ACTTGA68830841.7154954398036981No Hit
CGAGCC67463011.6814045275407257No Hit
GGATTC66988101.6695681771588737No Hit
GGACTA65134711.6233754807864664No Hit
CTGGAG65081601.6220518014182068No Hit
GACACG62946761.5688444268647284No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)