FastQCFastQC Report
Tue 26 Sep 2023
EGAF00001836402

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836402
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences401255611
Sequences flagged as poor quality0
Sequence length6
%GC45

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCGTAT99717672.485140824610176No Hit
AGTGCA99524502.4803266863226496No Hit
TGCGGA96422982.40303131860753No Hit
CCGCTC95172282.371861661019863No Hit
CATAAC91552622.2816533274596376No Hit
TTCCAT91004162.267984733551801No Hit
AAGCAT89331402.226296593769003No Hit
GATCCT88887292.2152285865480397No Hit
GTCTCA88129402.196340626374443No Hit
TGTGAT86499382.155717643036274No Hit
GGTGGT86090252.1455213993256783No Hit
AGGTGT85692422.1356067716147153No Hit
CCTGAC84435332.1042778639175217No Hit
TACGAA83725152.0865789213848527No Hit
CTTGTA83329472.076717875479129No Hit
ATACCT83069012.070226751296445No Hit
GAAGAT82885422.065651363564359No Hit
GCACAT82259262.0500463481369238No Hit
ACCAGG81997892.043532545143649No Hit
GAATAC81391622.0284232237191073No Hit
GAGTGA81335522.027025112428895No Hit
AGTAGG80415472.0040958380517204No Hit
TTCGTT80282232.000775261433042No Hit
GGCTAC80069791.9954808806399469No Hit
GGTACC79980231.9932488869295835No Hit
AACAAT79899451.9912357063587578No Hit
AATCGG79583751.9833679036079572No Hit
AGAGGT77574841.9333023108803333No Hit
AGCCTA76818531.9144537271031457No Hit
TAATGA76811411.9142762841016074No Hit
TATAAG75957121.8929858653116753No Hit
AGTCAA74362031.8532333993953796No Hit
AAGTTG74202241.849251149786414No Hit
CATTAA74122951.847275102652708No Hit
ATTGAA73915691.8421098166275862No Hit
TCAAGC73211391.8245574141018055No Hit
CGCTTG72933811.8176396292187924No Hit
GATCAG72760391.813317695886376No Hit
TGACAC72032251.79517115836668No Hit
GAGATA70766641.7636299171901175No Hit
CTTCAC69207761.7247798685611402No Hit
ACACGA68078471.696635963054483No Hit
AATGTA67298991.6772099418691993No Hit
GGCAGG66962851.6688327381420718No Hit
ACTAGC63305071.5776743867140588No Hit
TGACCA61452171.5314968393052577No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)