FastQCFastQC Report
Sun 2 Apr 2023
EGAF00001836404

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836404
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences275767765
Sequences flagged as poor quality0
Sequence length6
%GC49

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGTT67236212.438146097314891No Hit
TTCTGT60980432.2112965233626927No Hit
CTCCGC57503132.085201292471584No Hit
GGAGGC56741072.0575671706952408No Hit
TATGGT54957591.9928939120205003No Hit
ATTGCT54597211.9798256696173318No Hit
CACCTA54231461.966562698145666No Hit
CTATTA53641771.9451791256313078No Hit
TTACGT52644711.9090233407084398No Hit
AGGTCA52480541.903070143096674No Hit
TCGGAC52253701.894844381104514No Hit
GACTAA51838301.8797809816531674No Hit
GACCAT51223191.8574756190231296No Hit
TGATAA51191041.8563097829798925No Hit
CGTACT49935121.8107671141331545No Hit
AGACGG49873941.808548580723349No Hit
TCCTCC49725231.8031559997594353No Hit
GTTACA49681591.8015735087819273No Hit
CGAGAG49569311.797501966917707No Hit
AGTTCC49438011.7927407142745637No Hit
ATCAGC49419481.792068772069861No Hit
AGATGC49137531.7818445894138497No Hit
TAAGTC48995061.7766782858032737No Hit
TCTTCA48938411.7746240210490156No Hit
AATTGC48632951.763547309454388No Hit
ACCGCT48614621.762882619728959No Hit
ACCTGC48449391.756890983977043No Hit
TTCACA47912061.7374061105365233No Hit
ACGCTA46605661.6900329159211196No Hit
TACTCG46447071.6842820624810881No Hit
GACCGA45994341.6678649877733172No Hit
CGAATT45822801.6616445363003176No Hit
GAGAAG44950541.6300142984442No Hit
CGATGT43503521.577541885651501No Hit
ACAAGT43449641.5755880677351828No Hit
ATCCAC43362351.5724227231562038No Hit
ATTCAT43357831.5722588171246192No Hit
ATGTGA42573331.5438109671737739No Hit
ATTCGA42457911.5396255613849572No Hit
AGAACG42292211.5336168823067482No Hit
CTCGTC42264991.532629819877606No Hit
TATTCT42095261.5264750033420331No Hit
CGTCAG41965541.5217710452851514No Hit
CCAGCG41212781.4944741637950323No Hit
GTAAGA40764761.4782278849741557No Hit
TTGAAT40408411.465305780028351No Hit
CCCCCC6570860.23827512979988796No Hit
TCGGGC5709730.20704849241534812No Hit
TGTTCT5124040.18580996948646264No Hit
TGTGGT4355260.15793216440652516No Hit
CGAGGG4100120.14868017659714505No Hit
ATCCGC3839760.139238899078723No Hit
CGTCGG3827400.13879069585961218No Hit
TGCTCG3595110.1303673038072452No Hit
AGTTGC3498030.1268469503678213No Hit
TCTTCT3464340.12562527023417694No Hit
GACCGT3274420.1187383159159302No Hit
ATTCGT3210890.11643456587465907No Hit
GGTTCC3078650.11163922657892957No Hit
GTTGCT3007150.10904646523860395No Hit
GGGGGC2998350.10872735615056386No Hit
GTTCAT2989330.10840026933532279No Hit
CGTGCT2949930.10697153091841609No Hit
TTTTCT2774500.10061001872354444No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)