FastQCFastQC Report
Mon 12 Sep 2022
EGAF00001836408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00001836408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences30429188
Sequences flagged as poor quality0
Sequence length6
%GC48

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATAA5358581.7609999977653037No Hit
GTTACA4650041.5281511948330662No Hit
GACCAT4392381.4434759152955379No Hit
AGACGG4048341.3304134175384503No Hit
AGCCTA4037541.3268641936814087No Hit
TATAAG3668211.205490596725749No Hit
GGATTC3608011.185706960041129No Hit
GAGTGA3555981.1686082454779931No Hit
TATGGT3366321.1062799309662814No Hit
AGGTGT3333891.0956224004399986No Hit
ACTAAT3234881.0630845620987324No Hit
AGTCAA3146841.034151815027072No Hit
TATTCT3008100.9885574337376338No Hit
ACGTAA2971200.9764309188927421No Hit
CTAGTT2918770.9592007515941602No Hit
CCTTAT2791290.9173067648075262No Hit
ACAGCC2758370.9064882046803221No Hit
AGGCTT2753610.9049239171285149No Hit
TTCTGT2706960.8895932418571274No Hit
AAGCAT2615240.8594511296193642No Hit
AACAAT2608210.8571408477939011No Hit
GGTGGT2577200.8469499744784513No Hit
GCTGTC2542630.8355891718175326No Hit
GCACAT2542220.8354544327637005No Hit
GGCGTT2522850.8290888340497288No Hit
CTGTAT2505140.823268764187858No Hit
AATCGG2500390.8217077629544371No Hit
TACGGC2456150.8071690904141116No Hit
AACTAG2429590.7984406287804986No Hit
AGATGC2394330.7868530701509353No Hit
ATCAGC2365620.7774180500643001No Hit
CTTAGC2325760.7643187849771081No Hit
CCTGCT2261820.7433060652160682No Hit
CCGACT2235600.7346893384075842No Hit
CACCTA2206910.7252608909577213No Hit
TCTTCA2154820.7081424584842685No Hit
GTCTCA2136030.7019674662366936No Hit
ATACCT2131880.7006036441064415No Hit
ATTGAA2093560.6880104720507165No Hit
CCTGAC2082040.6842246332698724No Hit
GTCTGC2078010.6829002469602541No Hit
TGACAC2074370.6817040270676956No Hit
TACTCG2073550.6814345489600314No Hit
TTAGCG1967130.6464615486946284No Hit
CCATGA1944470.6390147512316136No Hit
CCTCGG1937320.6366650335855166No Hit
TCCAGA1929500.6340951326075478No Hit
AGTAGG1920450.6311210144680824No Hit
AGAACG1899940.6243807754580898No Hit
CAAGCT1890900.6214099436370106No Hit
ATCCAC1869610.6144133717928983No Hit
TGCGAC1865320.6130035412052401No Hit
ACGCTA1855130.6096547827697538No Hit
ACCTGC1818330.5975611311087237No Hit
TGGCAT1815490.5966278166870571No Hit
TCAAGC1808840.5944424149602677No Hit
GGCCAG1806470.5936635575027503No Hit
AAGTTG1804340.5929635716865005No Hit
TTCACA1793930.5895425142465188No Hit
TAGAGC1788380.5877186075422058No Hit
ACCGCT1721570.565762714404341No Hit
GTACGC1714450.5634228557134026No Hit
CATGAG1712950.5629299079554801No Hit
CTATTA1699700.558575536093832No Hit
TTCTAC1682370.552880346330635No Hit
TGTGTG1667540.5480067361639752No Hit
CTATGC1634860.5372670476780387No Hit
GAACCG1633540.5368332536510668No Hit
TTGAAT1609850.5290479653942787No Hit
CACATT1597860.5251076696492855No Hit
GGTACC1587870.521824637581522No Hit
CAGCCT1582070.5199185729175554No Hit
GGCCGT1577620.5184561612357188No Hit
AGTTCC1566410.5147721983248452No Hit
ATGGCC1562600.5135201110197223No Hit
CTCCGC1548840.5089981369203805No Hit
CAGTAG1544980.5077296180233268No Hit
ACTAGC1533430.5039339202873241No Hit
GTACTT1515010.4978805218200368No Hit
CATTAA1514810.4978147954523137No Hit
GAATAC1513050.4972364034163514No Hit
AATGTA1512540.49706880117865776No Hit
CCGTCG1504920.4945646265684118No Hit
TCCTCC1498660.4925073912586823No Hit
GCGCAG1488610.489204641280602No Hit
GACTAA1482900.48732815348211067No Hit
CATAAC1466560.4819583092391424No Hit
ACCAGG1456570.47867527717137903No Hit
GAGATA1426580.46881960833131664No Hit
GCGTAT1425260.46838581430434484No Hit
ATGCCG1413690.4645835439315699No Hit
ATTGCT1409380.46316714070713944No Hit
GATTCA1395390.45856958128491626No Hit
GATCCT1395310.4585432907378271No Hit
CGTCAG1383640.4547081571811907No Hit
CTTCAC1374780.4517964790910622No Hit
CAGTCC1348890.44328820078932113No Hit
GGACTA1348700.44322576073998426No Hit
TCGTGG1315770.4324039142943939No Hit
AACATA1314910.4321212909131851No Hit
AACCTT1307520.4296927016258206No Hit
CGTGAA1305290.42895985262570924No Hit
AGAGGT1303040.4282204309888256No Hit
AGGTCA1287270.4230379068938678No Hit
TAATGA1252540.4116245231387706No Hit
TCATGT1246880.40976446693220997No Hit
CGCTTG1241370.4079537055014416No Hit
GAGCCA1239820.40744432615158843No Hit
CGTCTC1236110.40622510203032697No Hit
TGATAA1235650.40607393138456405No Hit
GCTCAA1233180.40526221074318514No Hit
ATTCGA1219510.40076981350931873No Hit
CGACAA1215420.3994257092893836No Hit
AAGGCG1207980.3969806884100884No Hit
TCGGAC1207690.3968853851768901No Hit
CCGCTC1206940.39663891129792883No Hit
AAGCGC1201020.39469341081332826No Hit
TGCATA1197550.39355305833333437No Hit
GCGGCT1197390.39350047723915604No Hit
TACGAA1194350.39250143644976654No Hit
TATTGG1183280.3888634819962991No Hit
TGTGAT1167780.3837696884977673No Hit
CTGTTC1165270.3829448225828438No Hit
CAGGAC1164220.3825997591522981No Hit
CATACG1161250.3816237225916117No Hit
ACACGA1142320.3754027218866307No Hit
ATGTGA1116220.36682543089878045No Hit
CGAATT1113300.3658658259300248No Hit
GAGTCG1111850.3653893097640331No Hit
TCTCGC1105890.363430664005888No Hit
CTACCG1091010.35854062224729755No Hit
TTCGTT1086080.35692046728292587No Hit
CGAGCC1083660.35612517823347767No Hit
GGTAAT1082350.3556946705248921No Hit
GACACG1078380.35439000212559074No Hit
TAAGTC1071390.35209286557367225No Hit
GTAAGA1057820.3476333315236673No Hit
CGAGAG1034430.33994663281846366No Hit
AGTTAG1024390.3366471691587695No Hit
GGCAGG1004110.32998251547165836No Hit
AGTGCA983230.32312068268137817No Hit
GAAGAT978800.3216648436363139No Hit
TGCGGA969020.3184508242546597No Hit
TTCCAT956060.31419175562620993No Hit
GCTTCT933240.30669237706901675No Hit
ATCCGG925490.30414548031975086No Hit
CAAGGA921340.3027816581894988No Hit
GGATCG915040.3007112776062247No Hit
TCCACG906130.2977831679241654No Hit
GACCGA902230.29650150375356715No Hit
CGTACT868960.28556792248284774No Hit
GCCATA862590.28347453767087044No Hit
TCTCTG854170.2807074575897326No Hit
CCAGCG851710.2798990232667398No Hit
GAGCAC847130.27839388944588334No Hit
GACTTG844650.2775788824861183No Hit
TTACGT830560.2729484598800336No Hit
ATTCAT829160.27248837530597264No Hit
GTGGTG821510.2699743417405683No Hit
GTTGGC811570.2667077412647357No Hit
CTCGTC809620.26606690917943654No Hit
NNNNNN777720.2555835535276196No Hit
ACGAAC759340.2495433003338768No Hit
CTGGAG757960.24908978839658816No Hit
TTAGTA752670.2473513259703151No Hit
CCGGAA750890.24676636129758048No Hit
GTCGAG711270.2337459678516561No Hit
CCACTT705570.23187276637155088No Hit
GAGAAG702970.23101832359115204No Hit
CGAAGC699880.23000285120983183No Hit
GGAGGC696900.22902352833075926No Hit
TCAATG677840.2227598054867583No Hit
CAACGG670790.22044295102452288No Hit
AATTGC648600.21315061052565712No Hit
TACAGT606380.1992757742993339No Hit
AGGACT593980.19520073950050854No Hit
CTGAGG593680.19510214994892403No Hit
AAGAGG548100.1801231107448546No Hit
CGTTGC547620.1799653674623194No Hit
AACTCT449190.1476181355874498No Hit
GCCTGG356260.11707837882496241No Hit

[WARN]Adapter Content

Can't analyse adapters as read length is too short (12 vs 0)

Produced by FastQC (version 0.11.9)